Co-expression analysis

Gene ID ZmAffx.60.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g41650: unknown protein (HF=8e-1)
Module size 7 genes
NF 0.38
%ile 41.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7389.90.90ZmAffx.60.1.A1_atAI665094--8e-1At2g41650unknown proteinO.I.H.G.S.X.
0.4455.70.94Zm.9031.1.S1_atCD441372chloroplast Cu-Zn superoxide dismutase-8e-37At2g28190CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)O.I.H.G.S.X.
0.4455.70.97Zm.2321.3.A1_a_atBG841291hypothetical protein LOC100191581 /// hypothetical protein LOC100274569-3e-9At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)O.I.H.G.S.X.
0.3538.90.92Zm.7544.1.A1_atBM334017mRNA-3e-2At3g20650mRNA capping enzyme family proteinO.I.H.G.S.X.
0.3233.40.92Zm.8723.1.A1_a_atBM351794hypothetical protein LOC100277811-3e-1At3g28321unknown proteinO.I.H.G.S.X.
0.2521.30.94Zm.4027.2.A1_atCO527250hypothetical protein LOC100272558-6e-1At1g49600ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)O.I.H.G.S.X.
0.2014.20.93Zm.3518.1.A1_atBM337627--1e+0At2g22000PROPEP6 (Elicitor peptide 6 precursor)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.999.2GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
10.298.4GSM162265Wild type 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
9.598.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320467protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
7.997.9GSM162264Mutant 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
7.897.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1617536_at, orthologous to the query gene, ZmAffx.60.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7390.81617536_atAt2g41650--4e-3At4g31460ribosomal protein L28 family proteinO.I.H.G.S.X.
0.4969.31610582_atAt2g41650hypothetical protein LOC100263947-1e-19At5g38890exoribonuclease-relatedO.I.H.G.S.X.
0.4564.61622371_atAt2g41650hypothetical protein LOC100267229-5e-35At2g40600appr-1-p processing enzyme family proteinO.I.H.G.S.X.
0.4057.71606542_atAt2g41650hypothetical protein LOC100250325-1e+0At2g1045014-3-3 protein, putative / grf15, putativeO.I.H.G.S.X.
0.3853.61618681_atAt2g41650hypothetical protein LOC100241923-1e-30At1g49760PAB8 (POLY(A) BINDING PROTEIN 8)O.I.H.G.S.X.
0.3650.71618753_atAt2g41650hypothetical protein LOC100267318-1e-89At5g08570pyruvate kinase, putativeO.I.H.G.S.X.
0.3650.71613972_atAt2g41650hypothetical protein LOC100267580-4e+0At5g6230040S ribosomal protein S20 (RPS20C)O.I.H.G.S.X.
0.3650.71606671_atAt2g41650hypothetical protein LOC100262399-3e-21At4g31580SRZ-22O.I.H.G.S.X.
0.3345.71618710_atAt2g41650similar to Os02g0122000-1e-7At2g45640SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)O.I.H.G.S.X.
0.3141.31617767_s_atAt2g41650hypothetical protein LOC100259387-2e-15At5g50870UBC27 (ubiquitin-conjugating enzyme 27)O.I.H.G.S.X.
0.3141.31608604_atAt2g41650hypothetical protein LOC100260136-7e-24At3g0556060S ribosomal protein L22-2 (RPL22B)O.I.H.G.S.X.
0.3039.41608241_atAt2g41650hypothetical protein LOC100251333-1e-15At5g06000EIF3G2O.I.H.G.S.X.
0.2632.01617329_atAt2g41650hypothetical protein LOC100255368-5e-49At3g19760eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.2632.01620514_atAt2g41650hypothetical protein LOC100250416-2e-2At1g02330-O.I.H.G.S.X.
0.2530.51616748_atAt2g41650hypothetical protein LOC100246856-2e-37At3g49470NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)O.I.H.G.S.X.
0.2327.51607686_s_atAt2g41650similar to 60S ribosomal protein L29-7e-10At3g0670060S ribosomal protein L29 (RPL29A)O.I.H.G.S.X.
0.2022.41614100_s_atAt2g41650hypothetical protein LOC100256218-7e-34At4g21110G10 family proteinO.I.H.G.S.X.
0.1920.91618317_atAt2g41650hypothetical protein LOC100243000-3e-45At2g0522040S ribosomal protein S17 (RPS17B)O.I.H.G.S.X.
0.1819.41611545_atAt2g41650hypothetical protein LOC100260759-2e-14At1g76200unknown proteinO.I.H.G.S.X.
0.1718.21615214_atAt2g41650hypothetical protein LOC100249128-1e-38At2g30050transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.1718.21607924_atAt2g41650hypothetical protein LOC100261557-3e-11At4g16580catalyticO.I.H.G.S.X.
0.1718.21620790_atAt2g41650hypothetical protein LOC100249710-5e-4At5g43960nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.1212.11620482_atAt2g41650hypothetical protein LOC100255975-1e+0At1g28510-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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