Co-expression analysis

Gene ID ZmAffx.60.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g41650: unknown protein (HF=8e-1)
Module size 7 genes
NF 0.38
%ile 41.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7389.90.90ZmAffx.60.1.A1_atAI665094--8e-1At2g41650unknown proteinO.I.H.G.S.X.
0.4455.70.94Zm.9031.1.S1_atCD441372chloroplast Cu-Zn superoxide dismutase-8e-37At2g28190CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)O.I.H.G.S.X.
0.4455.70.97Zm.2321.3.A1_a_atBG841291hypothetical protein LOC100191581 /// hypothetical protein LOC100274569-3e-9At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)O.I.H.G.S.X.
0.3538.90.92Zm.7544.1.A1_atBM334017mRNA-3e-2At3g20650mRNA capping enzyme family proteinO.I.H.G.S.X.
0.3233.40.92Zm.8723.1.A1_a_atBM351794hypothetical protein LOC100277811-3e-1At3g28321unknown proteinO.I.H.G.S.X.
0.2521.30.94Zm.4027.2.A1_atCO527250hypothetical protein LOC100272558-6e-1At1g49600ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)O.I.H.G.S.X.
0.2014.20.93Zm.3518.1.A1_atBM337627--1e+0At2g22000PROPEP6 (Elicitor peptide 6 precursor)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.999.2GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
10.298.4GSM162265Wild type 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
9.598.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320467protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
7.997.9GSM162264Mutant 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
7.897.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.2396.3.A1_at, orthologous to the query gene, ZmAffx.60.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6182.0Ta.2396.3.A1_atAt2g41650--1e+0At5g60440AGL62 (Agamous-like 62)O.I.H.G.S.X.
0.5273.7TaAffx.55845.1.S1_atAt2g41650--3e-1At3g26770short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4464.5Ta.9378.3.A1_atAt2g41650--7e-1At3g50790late embryogenesis abundant protein, putative / LEA protein, putativeO.I.H.G.S.X.
0.4464.5TaAffx.105396.1.S1_s_atAt2g41650--3e+0At4g20440smB (small nuclear ribonucleoprotein associated protein B)O.I.H.G.S.X.
0.4464.5Ta.25084.2.S1_atAt2g41650--4e+0At3g48550-O.I.H.G.S.X.
0.3346.9Ta.25529.2.A1_atAt2g41650--4e+0At3g28560-O.I.H.G.S.X.
0.3142.7Ta.23339.2.S1_atAt2g41650--1e+0At1g31510F-box family protein-relatedO.I.H.G.S.X.
0.2939.2TaAffx.4485.1.S1_atAt2g41650--2e-1At4g21213unknown proteinO.I.H.G.S.X.
0.2939.2Ta.2946.2.S1_atAt2g41650--2e+1At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.2839.2TaAffx.54707.1.S1_atAt2g41650--4e+0At2g34340unknown proteinO.I.H.G.S.X.
0.2633.6TaAffx.18372.1.S1_atAt2g41650--3e-1At1g19730ATTRX4O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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