Co-expression analysis

Gene ID ZmAffx.60.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g41650: unknown protein (HF=8e-1)
Module size 7 genes
NF 0.38
%ile 41.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7389.90.90ZmAffx.60.1.A1_atAI665094--8e-1At2g41650unknown proteinO.I.H.G.S.X.
0.4455.70.94Zm.9031.1.S1_atCD441372chloroplast Cu-Zn superoxide dismutase-8e-37At2g28190CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)O.I.H.G.S.X.
0.4455.70.97Zm.2321.3.A1_a_atBG841291hypothetical protein LOC100191581 /// hypothetical protein LOC100274569-3e-9At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)O.I.H.G.S.X.
0.3538.90.92Zm.7544.1.A1_atBM334017mRNA-3e-2At3g20650mRNA capping enzyme family proteinO.I.H.G.S.X.
0.3233.40.92Zm.8723.1.A1_a_atBM351794hypothetical protein LOC100277811-3e-1At3g28321unknown proteinO.I.H.G.S.X.
0.2521.30.94Zm.4027.2.A1_atCO527250hypothetical protein LOC100272558-6e-1At1g49600ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)O.I.H.G.S.X.
0.2014.20.93Zm.3518.1.A1_atBM337627--1e+0At2g22000PROPEP6 (Elicitor peptide 6 precursor)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.999.2GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
10.298.4GSM162265Wild type 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
9.598.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320467protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
7.997.9GSM162264Mutant 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
7.897.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0439700, orthologous to the query gene, ZmAffx.60.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8194.8Os03g0439700At2g41650-Protein of unknown function DUF1230 family protein2e-16At5g67370unknown proteinO.I.H.G.S.X.
0.6987.9Os10g0573700At2g41650--2e-4At5g46800BOU (A BOUT DE SOUFFLE)O.I.H.G.S.X.
0.6787.2Os08g0566600At2g41650-Conserved hypothetical protein3e-2At2g05620PGR5 (proton gradient regulation 5)O.I.H.G.S.X.
0.6583.8Os08g0440800At2g41650-Glyceraldehyde-3-phosphate dehydrogenase3e-88At4g23100GSH1 (GLUTAMATE-CYSTEINE LIGASE)O.I.H.G.S.X.
0.6382.7Os01g0235100At2g41650-Conserved hypothetical protein2e+0At5g23090NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)O.I.H.G.S.X.
0.6181.2Os06g0704700At2g41650-Conserved hypothetical protein1e-34At1g16720HCF173 (high chlorophyll fluorescence phenotype 173)O.I.H.G.S.X.
0.5676.3Os01g0235900At2g41650-Glutaredoxin domain containing protein1e+1At3g47140F-box family protein-relatedO.I.H.G.S.X.
0.5471.9Os01g0866400At2g41650-Fructose-1,6-bisphosphatase (EC 3.1.3.11)(Fragment)8e-38At1g43670fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putativeO.I.H.G.S.X.
0.5471.9Os04g0583000At2g41650-TPR-like domain containing protein7e-2At4g02380SAG21 (SENESCENCE-ASSOCIATED GENE 21)O.I.H.G.S.X.
0.5371.3Os12g0626400At2g41650-Squalene/phytoene synthase family protein7e-10At5g17230phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferaseO.I.H.G.S.X.
0.5269.6Os01g0938100At2g41650-Photosystem II protein PsbW, class I familyprotein2e+0At3g44950glycine-rich proteinO.I.H.G.S.X.
0.4863.7Os02g0285800At2g41650-GTP-binding protein TypA family protein4e-62At5g13650elongation factor family proteinO.I.H.G.S.X.
0.4762.3Os11g0432400At2g41650-2-oxoglutarate/malate translocator2e-13At5g19760dicarboxylate/tricarboxylate carrier (DTC)O.I.H.G.S.X.
0.4558.8Os10g0419500At2g41650-Acireductone dioxygenase, ARD family protein2e-10At5g43850ARD4O.I.H.G.S.X.
0.4458.1Os04g0507100At2g41650-Conserved hypothetical protein3e-3At4g28740-O.I.H.G.S.X.
0.4458.1Os12g0124000At2g41650-SMAD/FHA domain containing protein5e-1At5g08400unknown proteinO.I.H.G.S.X.
0.4355.4Os02g0593500At2g41650--6e-18At3g26570PHT2O.I.H.G.S.X.
0.4152.4Os10g0567400At2g41650-Rieske [2Fe-2S] region domain containing protein5e-9At1g44446CH1 (CHLORINA 1)O.I.H.G.S.X.
0.3948.3Os03g0128800At2g41650-Conserved hypothetical protein7e-1At1g23530unknown proteinO.I.H.G.S.X.
0.3644.0Os01g0826900At2g41650-Protein of unknown function DUF399 family protein3e-32At2g40400unknown proteinO.I.H.G.S.X.
0.3440.0Os07g0656700At2g41650-Protein of unknown function DUF1334 family protein4e-11At5g13720-O.I.H.G.S.X.
0.3236.3Os02g0499000At2g41650-Pathogenesis-related transcriptional factor andERF domain containing protein1e-20At4g13040AP2 domain-containing transcription factor family proteinO.I.H.G.S.X.
0.2727.5Os02g0556800At2g41650-Conserved hypothetical protein3e-2At1g04445zinc finger (C2H2 type) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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