Co-expression analysis

Gene ID	ZmAffx.52.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g07110: 60S ribosomal protein L13A (RPL13aA) (HF=1e-1)
Module size	21 genes
NF	0.45
%ile	54.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	90.8	0.96	ZmAffx.52.1.A1_at	AI665021	-	-	1e-1	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.98	Zm.12433.1.S1_at	AY105016.1	tyrosyl-tRNA synthetase	-	4e-18	At2g33840	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.97	Zm.12674.1.A1_at	CN845329	-	-	5e-5	At1g34350	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.97	Zm.18873.1.S1_at	AY103904.1	programmed cell death protein 2	-	2e-3	At4g02220	zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	Zm.10098.1.A1_at	CO531187	hypothetical protein LOC100272958	-	2e-2	At2g44060	late embryogenesis abundant family protein / LEA family protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.97	Zm.13303.1.S1_at	CA827309	-	-	4e+0	At1g27390	TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2)	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.97	Zm.14833.1.A1_at	CF629020	-	-	7e+0	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	Zm.18374.1.A1_at	CO521737	hypothetical protein LOC100191144	-	1e-1	At1g21890	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.2894.1.A1_at	AY104773.1	-	-	1e-45	At3g50500	SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.12377.1.S1_at	BQ577907	-	-	1e+1	At3g10915	reticulon family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.13417.1.A1_at	CA400681	hypothetical protein LOC100193979	-	4e-1	At3g05830	-	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.13788.1.S1_at	AW313252	thioredoxin reductase 2	-	5e-5	At4g35460	NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.7644.2.S1_at	BM341428	-	-	4e+0	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.12844.2.A1_a_at	CF623983	hypothetical protein LOC100194377	-	4e-10	At5g16540	ZFN3 (ZINC FINGER NUCLEASE 3)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.12997.1.S1_at	CA402647	-	-	2e-21	At3g46740	TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.12736.2.A1_at	AI881252	-	-	5e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.15155.1.A1_at	CO526660	hypothetical protein LOC100193626	-	2e+0	At3g27200	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.5180.1.A1_at	AI612313	-	-	1e+1	At5g27090	AGL54	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.17862.1.A1_at	CO520595	serine/threonine-protein kinase WNK4	-	5e+0	At4g09440	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.375.1.S1_at	AF057184.1	trypsin inhibitor	-	1e-1	At5g02440	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.18125.1.S1_at	CN844337	-	-	4e-1	At3g47380	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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