Co-expression analysis

Gene ID	ZmAffx.516.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g25630: pentatricopeptide (PPR) repeat-containing protein (HF=8e-1)
Module size	6 genes
NF	0.45
%ile	54.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.94	ZmAffx.516.1.A1_at	AI692117	-	-	8e-1	At5g25630	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.94	Zm.2740.1.A1_at	CA402161	hypothetical protein LOC100191297	-	7e-1	At1g02840	SR1	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.94	Zm.7788.1.A1_at	CK347752	anthocyanidin 3-O-glucosyltransferase	-	9e-1	At3g24093	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.94	Zm.1829.1.A1_at	CF637700	brix domain-containing protein 1	-	3e+0	At5g17710	EMB1241 (embryo defective 1241)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.8081.1.A1_at	CA403539	-	-	3e+0	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.95	Zm.9839.1.A1_at	BM339393	Hypothetical protein LOC100193033	-	3e+0	At2g17300	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.3	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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