Co-expression analysis

Gene ID	ZmAffx.501.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g62100: ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2) (HF=8e-1)
Module size	42 genes
NF	0.40
%ile	44.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.2	0.82	ZmAffx.501.1.S1_at	AI691747	-	-	8e-1	At5g62100	ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.84	ZmAffx.361.1.A1_at	AI670571	-	-	8e-1	At1g15800	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.87	Zm.13913.1.S1_s_at	AF073332.1	ROA protein 1 /// replication origin activator 2 /// replication origin activator 4	-	8e-11	At5g46280	DNA replication licensing factor, putative	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.85	Zm.10390.1.A1_at	AY108030.1	hypothetical protein LOC100193343	-	2e+0	At1g19600	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.83	Zm.13899.1.S1_x_at	AF099383.1	R2R3MYB-domain protein	-	6e-2	At4g37780	MYB87 (MYB DOMAIN PROTEIN 87)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.90	Zm.762.1.A1_a_at	BG349623	-	-	1e-4	At3g05740	RECQI1 (Arabidopsis RecQ helicase l1)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.88	ZmAffx.29.1.S1_at	AI657322	-	-	2e-1	At1g65445	transferase-related	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.87	ZmAffx.370.1.S1_at	AI673868	-	-	3e+0	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.85	ZmAffx.375.1.A1_at	AI673907	-	-	3e+0	At1g35340	ATP-dependent protease La (LON) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.89	ZmAffx.338.1.S1_at	AI670525	-	-	3e+0	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.87	ZmAffx.328.1.A1_at	AI670510	-	-	3e+0	At3g07510	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.88	RPTR-Zm-J01347-1_at	RPTR-Zm-J01347-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.85	ZmAffx.366.1.A1_at	AI673846	-	-	5e+0	At3g63350	AT-HSFA7B	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.89	RPTR-Zm-J01347-2_at	RPTR-Zm-J01347-2	-	-			-	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.89	ZmAffx.452.1.A1_at	AI677152	-	-	3e-6	At3g03380	DegP7 (DegP protease 7)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.93	RPTR-Zm-ECOLOXL_at	RPTR-Zm-ECOLOXL	-	-			-	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.93	Zm.11965.1.A1_at	BM382230	hypothetical protein LOC100275559	-	2e+0	At1g06070	bZIP transcription factor, putative (bZIP69)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.87	ZmAffx.649.1.S1_at	AI715077	-	-	3e+0	At4g22000	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.90	ZmAffx.675.1.A1_at	AI734494	-	-	3e+0	At4g24700	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.91	Zm.14226.1.A1_at	BM337251	hypothetical protein LOC100273457	-	3e-2	At3g20100	CYP705A19	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.90	RPTR-Zm-ECOLOXB_x_at	RPTR-Zm-ECOLOXB	-	-			-	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.90	RPTR-Zm-J01347-3_at	RPTR-Zm-J01347-3	-	-			-	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.88	ZmAffx.334.1.A1_at	AI670520	-	-	1e+1	At3g23440	EDA6 (EMBRYO SAC DEVELOPMENT ARREST 6)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.85	ZmAffx.506.1.A1_at	AI691930	-	-	3e-1	At5g07225	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.91	Zm.610.1.A1_at	AF326498.1	small basic membrane intrinsic protein1b	-	1e-1	At4g16360	AMP-activated protein kinase	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.89	Zm.15431.1.S1_at	CO526051	hypothetical protein LOC100276766	-	1e-3	At1g80780	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.84	Zm.16892.3.S1_a_at	CB281906	calmodulin binding protein	-	5e-3	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.89	ZmAffx.426.1.A1_at	AI676860	-	-	5e-2	At5g43210	endo/excinuclease amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.89	Zm.2165.1.A1_at	BM072875	hypothetical protein LOC100278701	-	6e+0	At5g25390	SHN2 (shine2)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.88	ZmAffx.519.1.A1_at	AI711610	hypothetical protein LOC100193190	-	3e+0	At3g21352	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.88	Zm.34.2.A1_at	AY103769.1	nuclear cap-binding protein subunit 2	-	1e-13	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.89	ZmAffx.535.1.A1_at	AI711782	-	-	2e-1	At1g23270	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.89	RPTR-Zm-J01347-1_s_at	RPTR-Zm-J01347-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.90	Zm.1422.1.A1_at	CA402968	hypothetical protein LOC100279513	-	1e-59	At2g45290	transketolase, putative	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.89	Zm.9142.1.A1_at	BM341036	-	-	4e-1	At3g23170	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.85	Zm.17208.1.A1_at	BE051805	Hypothetical protein LOC100193862	-	3e-2	At5g38895	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.88	Zm.1079.6.A1_at	CF634247	carbonic anhydrase	-	5e-1	At1g56550	UDP-xylosyltransferase	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.91	ZmAffx.519.1.S1_at	AI711610	Hypothetical protein LOC100193190	-	3e+0	At3g21352	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.90	ZmAffx.19.1.A1_at	AI586648	PWWP domain containing protein	-	1e+1	At1g48745	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.89	Zm.9745.1.A1_at	BM341408	-	-	2e+1	At5g24570	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.87	Zm.3301.1.S1_at	BG842863	hypothetical protein LOC100216845	-	7e-25	At5g26030	FC1 (ferrochelatase 1)	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.87	Zm.12152.1.S1_at	CK394699	hypothetical protein LOC100274505	-	1e-5	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.6	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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