Co-expression analysis

Gene ID	ZmAffx.485.1.S1_at
Gene name
Homology with Arabidopsis	Similar to Atmg00140: - (HF=8e-1)
Module size	7 genes
NF	0.07
%ile	3.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	90.8	0.92	ZmAffx.485.1.S1_at	AI691349	-	-	8e-1	Atmg00140	-	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.94	Zm.4437.1.S1_at	CO522989	cuc3 protein	-	2e-1	At1g76420	CUC3 (CUP SHAPED COTYLEDON3)	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.93	Zm.17559.1.A1_at	CK348120	hypothetical protein LOC100279176	-	5e+0	At5g56840	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.93	Zm.7632.1.S1_at	AW129874	GTP cyclohydrolase I 1	-	6e+0	At5g13800	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.93	Zm.4099.1.A1_at	CD438327	hypothetical protein LOC100191159	-	3e+0	At3g57720	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.04	1.5	0.94	Zm.16828.2.S1_a_at	CF632030	amelogenin precursor like protein	-	5e+0	Atcg01120	-	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.93	Zm.7100.1.S1_at	CN071404	hypothetical protein LOC100273549	-	2e+0	At5g56230	PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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