Co-expression analysis

Gene ID	ZmAffx.475.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g74210: glycerophosphoryl diester phosphodiesterase family protein (HF=2e-1)
Module size	6 genes
NF	0.72
%ile	93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.91	ZmAffx.475.1.S1_at	AI677510	-	-	2e-1	At1g74210	glycerophosphoryl diester phosphodiesterase family protein	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.91	ZmAffx.1405.1.S1_at	40794996-80	-	-	0	Atmg00510	-	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.94	Zm.13136.1.A1_at	CA404810	hypothetical protein LOC100191921	-	4e+0	At4g32900	aminoacyl-tRNA hydrolase	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.94	Zm.3876.1.S1_at	AY111960.1	hypothetical protein LOC100278092	-	5e+0	At4g17030	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.94	Zm.13055.2.S1_at	CA403909	nuclear transcription factor Y subunit B-3	-	6e-19	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.92	Zm.4733.1.A1_at	CD441088	hypothetical protein LOC100193930	-	2e-14	At1g76900	AtTLP1 (TUBBY LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.6	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1606889_at, orthologous to the query gene, ZmAffx.475.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	1606889_at	At1g74210	-	-	4e+0	At1g69210	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	80.6	1610243_at	At1g74210	hypothetical protein LOC100242434	-	3e-2	At2g29460	ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1613108_at	At1g74210	hypothetical protein LOC100245787	-	4e-1	At1g70450	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1612448_at	At1g74210	hypothetical protein LOC100256681	-	1e-10	At2g17040	anac036 (Arabidopsis NAC domain containing protein 36)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1608318_at	At1g74210	hypothetical LOC100241440	-	1e-3	At2g44580	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.32	43.1	1619027_at	At1g74210	-	-	7e-2	At4g39250	ATRL1 (ARABIDOPSIS RAD-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.24	28.7	1611546_s_at	At1g74210	hypothetical protein LOC100258349	-	1e-3	At5g28680	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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