Co-expression analysis

Gene ID	ZmAffx.475.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g74210: glycerophosphoryl diester phosphodiesterase family protein (HF=2e-1)
Module size	6 genes
NF	0.72
%ile	93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.91	ZmAffx.475.1.S1_at	AI677510	-	-	2e-1	At1g74210	glycerophosphoryl diester phosphodiesterase family protein	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.91	ZmAffx.1405.1.S1_at	40794996-80	-	-	0	Atmg00510	-	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.94	Zm.13136.1.A1_at	CA404810	hypothetical protein LOC100191921	-	4e+0	At4g32900	aminoacyl-tRNA hydrolase	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.94	Zm.3876.1.S1_at	AY111960.1	hypothetical protein LOC100278092	-	5e+0	At4g17030	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.94	Zm.13055.2.S1_at	CA403909	nuclear transcription factor Y subunit B-3	-	6e-19	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.92	Zm.4733.1.A1_at	CD441088	hypothetical protein LOC100193930	-	2e-14	At1g76900	AtTLP1 (TUBBY LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.6	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.52790.1.S1_at, orthologous to the query gene, ZmAffx.475.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.52790.1.S1_at	At1g74210	-	-	4e+0	At4g17850	-	O.I.	H.G.	S.X.	Please select
0.04	5.8	TaAffx.91431.1.A1_at	At1g74210	-	-	4e+0	At1g80890	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	TaAffx.38637.2.S1_at	At1g74210	-	-	4e+0	At4g12470	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	Ta.13655.1.A1_at	At1g74210	-	-	6e+0	At3g25270	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.02	3.6	Ta.9084.3.S1_at	At1g74210	-	-	1e+1	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	TaAffx.84292.1.S1_at	At1g74210	-	-	2e+0	At4g05070	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage