Co-expression analysis

Gene ID ZmAffx.466.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g52870: peroxisomal membrane protein-related (HF=8e-4)
Module size 6 genes
NF 0.37
%ile 39.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.91ZmAffx.466.1.A1_atAI677405--8e-4At1g52870peroxisomal membrane protein-relatedO.I.H.G.S.X.
0.4048.50.92Zm.3892.10.A1_atAI691846hypothetical protein LOC100273074-1e-19At1g35550elongation factor Tu C-terminal domain-containing proteinO.I.H.G.S.X.
0.3336.00.93Zm.18287.1.A1_atBG517659hypothetical protein LOC100193796-4e-32At5g36700PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1)O.I.H.G.S.X.
0.3131.60.91Zm.2540.1.A1_atAY105941.1spermidine synthase-2e-3At1g23820SPDS1 (spermidine synthase 1)O.I.H.G.S.X.
0.2928.10.91Zm.5390.1.A1_atBM078263single-stranded DNA-binding protein-9e+0At5g41992CPuORF58 (Conserved peptide upstream open reading frame 58)O.I.H.G.S.X.
0.2724.60.92Zm.6797.1.A1_atAI396390hypothetical protein LOC100279100-4e+0At3g15270SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.499.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
22.599.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
19.399.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.799.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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