Co-expression analysis

Gene ID	ZmAffx.397.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g63870: PP7 (SERINE/THREONINE PHOSPHATASE 7) (HF=3e+0)
Module size	30 genes
NF	0.52
%ile	66.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	91.1	0.92	ZmAffx.397.1.A1_at	AI676825	-	-	3e+0	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.95	Zm.10401.1.S1_at	CO524902	glyoxylate reductase	-	3e-12	At1g79870	oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.93	ZmAffx.944.1.S1_at	AI820414	-	-	2e-10	At3g57150	NAP57 (Arabidopsis thaliana homologue of NAP57)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	ZmAffx.902.1.S1_at	AI770904	hypothetical protein LOC100191467	-	3e+0	At4g16640	matrix metalloproteinase, putative	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.94	ZmAffx.890.1.S1_at	AI770846	protein dimerization	-	3e+0	At5g37240	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.94	Zm.4604.1.A1_at	CD959559	-	-	5e+0	At5g37220	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.95	Zm.8795.1.A1_a_at	BM337357	-	-	5e+0	At5g66550	Maf family protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	ZmAffx.830.1.S1_at	AI770534	-	-	6e+0	At5g40930	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.96	Zm.4250.1.A1_at	T18710	autophagy-related 3	-	8e-13	At5g61500	ATG3	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.96	ZmAffx.937.1.S1_at	AI820257	-	-	8e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.96	Zm.9880.2.S1_at	AY110782.1	-	-	1e+0	At5g57310	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.95	Zm.13651.1.A1_a_at	CF630501	hypothetical protein LOC100276323	-	2e+1	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.96	Zm.386.1.S1_at	L20621.1	tassel seed2	-	4e-2	At3g13850	LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.94	Zm.8565.1.S1_at	CO528893	hypothetical protein LOC100279882	-	8e-7	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.94	ZmAffx.222.1.A1_at	AI670230	-	-	1e+1	At5g38650	proteasome maturation factor UMP1 family protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.94	ZmAffx.54.1.S1_at	AI665038	-	-	5e-2	At3g20610	non-race specific disease resistance protein, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	ZmAffx.138.1.S1_at	AI667759	-	-	3e+0	At1g66510	AAR2 protein family	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.96	ZmAffx.549.1.S1_at	AI712143	-	-	3e+0	At1g22067	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.95	Zm.15903.1.S1_at	L77912.1	phenylalanine ammonia-lyase	-	2e-14	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.94	ZmAffx.144.1.S1_at	AI667795	-	-	8e-1	At3g57390	AGL18	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.96	ZmAffx.1278.1.S1_s_at	11990232-66	-	-	1e+0	At3g22880	DMC1 (DISRUPTION OF MEIOTIC CONTROL 1)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.9804.1.A1_at	CD956095	-	-	4e+0	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.97	Zm.3851.3.A1_a_at	CA399586	-	-	5e+0	At1g20340	DRT112	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.96	Zm.8772.1.A1_at	CF018678	hypothetical protein LOC100192757	-	2e-38	At5g54080	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.93	Zm.5976.2.S1_x_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.96	Zm.18134.1.A1_at	CN844971	-	-	2e-1	At2g18050	HIS1-3 (HISTONE H1-3)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.12546.1.S1_a_at	AY104987.1	-	-	2e+0	At3g43440	JAZ11 (JASMONATE-ZIM-DOMAIN PROTEIN 11)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.95	ZmAffx.1009.1.A1_at	AI881408	-	-	2e+0	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.4550.1.A1_at	AI734748	rac GTPase activating protein	-	2e-6	At3g11490	rac GTPase activating protein, putative	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.95	Zm.14852.1.A1_x_at	AI857162	-	-	2e-11	At3g57290	EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.7	99.2	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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