Co-expression analysis

Gene ID	ZmAffx.392.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g31035: - (HF=1e+1)
Module size	14 genes
NF	0.79
%ile	97.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.62	79.8	0.97	ZmAffx.392.1.S1_at	AI676820	-	-	1e+1	At2g31035	-	O.I.	H.G.	S.X.	Please select
0.90	97.0	0.97	Zm.3520.1.A2_at	BM078576	-	-	1e-94	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.90	97.0	0.97	ZmAffx.1189.1.S1_at	BE025258	hypothetical protein LOC100274447	-	8e-1	At3g04181	unknown protein	O.I.	H.G.	S.X.	Please select
0.88	96.7	0.98	Zm.17358.1.A1_at	CF624129	PTD008 protein /// PTD008 protein	-	1e-1	At3g09770	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.86	96.3	0.97	Zm.5051.1.A1_at	AI600543	nucleotide binding protein	-	5e+0	At5g09990	PROPEP5 (Elicitor peptide 5 precursor)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.98	Zm.17441.1.A1_at	BM268338	-	-	5e-1	At5g06910	ATJ6 (Arabidopsis J-domain protein 6)	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.97	Zm.2365.2.S1_at	AI739988	hypothetical protein LOC100216757	-	1e-14	At1g64040	TOPP3	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.97	Zm.2626.1.A1_at	AY112337.1	hypothetical protein LOC100193977	-	3e-1	At5g47090	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.97	Zm.4021.1.A1_at	AW231310	hypothetical protein LOC100217057	-	7e-1	At5g62610	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.97	Zm.18099.1.A1_at	CF631457	hypothetical protein LOC100216597	-	2e-3	At5g48560	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.17700.1.S1_at	CK369359	-	-	3e+0	At5g20190	binding	O.I.	H.G.	S.X.	Please select
0.72	88.6	0.98	ZmAffx.1191.1.A1_at	BE025269	-	-	5e-2	At4g23720	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	ZmAffx.212.1.A1_at	AI670220	-	-	3e+0	At5g21010	ATBPM5 (BTB-POZ and MATH domain 5)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.6278.1.S1_at	CF015568	hypothetical protein LOC100277773	-	2e-2	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.7	98.9	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320469	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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