CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.388.1.A1_at

Gene name hypothetical protein LOC100279879
Homology with Arabidopsis Similar to At5g18270: ANAC087 (HF=3e+0)

Module size 6 genes

NF 0.01

%ile 0.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.85 ZmAffx.388.1.A1_at AI673984 hypothetical protein LOC100279879 - 3e+0 At5g18270 ANAC087 O.I. H.G. S.X.
0.36 41.3 0.90 ZmAffx.372.1.A1_at AI673888 anther-specific protein SF18 - 8e-1 At3g59680 unknown protein O.I. H.G. S.X.
0.04 1.5 0.88 Zm.2768.1.A1_at AW067159 Hypothetical protein LOC100193535 - 1e+0 At5g04760 myb family transcription factor O.I. H.G. S.X.
0.01 0.3 0.91 Zm.14696.2.A1_a_at AW507051 ribosome biogenesis protein NEP1 - 4e+0 At5g55990 CBL2 (CALCINEURIN B-LIKE 2) O.I. H.G. S.X.
- 0.1 0.92 Zm.16923.3.A1_at BQ619322 chlorophyll a-b binding protein 2 - 2e-50 At2g34430 LHB1B1 O.I. H.G. S.X.
- 0.1 0.89 Zm.5358.1.A1_at CF003205 ras-related protein Rab11D - 9e-1 At2g01250 60S ribosomal protein L7 (RPL7B) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.36	41.3	0.89	Zm.11692.1.A1_at	BM379959	-	-	4e+0	At3g42155	catalytic/ hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.
0.33	36.0	0.85	ZmAffx.415.1.S1_at	AI670503	-	-	1e+1	At5g67450	AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)	O.I.	H.G.	S.X.
0.30	29.8	0.84	Zm.9553.1.A1_at	BM266501	hypothetical protein LOC100277290	-	3e-2	At2g01090	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	O.I.	H.G.	S.X.
0.27	24.6	0.83	ZmAffx.45.1.S1_at	AI664925	-	-	8e-1	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.20	14.2	0.88	Zm.11731.1.A1_at	BM380291	helix-loop-helix DNA-binding domain containing protein	-	5e-9	At4g09180	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.17	10.6	0.90	Zm.17361.1.S1_at	CK370908	-	-	5e-19	At3g55320	PGP20 (P-GLYCOPROTEIN 20)	O.I.	H.G.	S.X.
0.15	8.6	0.93	Zm.10818.1.S1_at	CF650494	hypothetical protein LOC100273163	-	1e-4	At4g02610	tryptophan synthase, alpha subunit, putative	O.I.	H.G.	S.X.
0.14	7.7	0.90	Zm.6686.1.A1_at	AY107202.1	hypothetical protein LOC100191645	-	3e-3	At4g16580	catalytic	O.I.	H.G.	S.X.
0.12	5.9	0.86	Zm.13485.1.S1_at	AY108893.1	-	-	3e-1	At5g16540	ZFN3 (ZINC FINGER NUCLEASE 3)	O.I.	H.G.	S.X.
0.11	5.3	0.90	ZmAffx.298.1.A1_at	AI670431	-	-	3e+0	At2g46375	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.7 98.9 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4 98.9 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0 98.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7 98.6 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7 98.3 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8 97.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4 97.8 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2 97.8 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1 97.7 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1 96.8 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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