Co-expression analysis

Gene ID ZmAffx.388.1.A1_at
Gene name hypothetical protein LOC100279879
Homology with ArabidopsisSimilar to At5g18270: ANAC087 (HF=3e+0)
Module size 6 genes
NF 0.01
%ile 0.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.85ZmAffx.388.1.A1_atAI673984hypothetical protein LOC100279879-3e+0At5g18270ANAC087O.I.H.G.S.X.
0.3641.30.90ZmAffx.372.1.A1_atAI673888anther-specific protein SF18-8e-1At3g59680unknown proteinO.I.H.G.S.X.
0.041.50.88Zm.2768.1.A1_atAW067159Hypothetical protein LOC100193535-1e+0At5g04760myb family transcription factorO.I.H.G.S.X.
0.010.30.91Zm.14696.2.A1_a_atAW507051ribosome biogenesis protein NEP1-4e+0At5g55990CBL2 (CALCINEURIN B-LIKE 2)O.I.H.G.S.X.
-0.10.92Zm.16923.3.A1_atBQ619322chlorophyll a-b binding protein 2-2e-50At2g34430LHB1B1O.I.H.G.S.X.
-0.10.89Zm.5358.1.A1_atCF003205ras-related protein Rab11D-9e-1At2g0125060S ribosomal protein L7 (RPL7B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.798.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.498.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.098.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.196.8GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.110205.1.S1_at, orthologous to the query gene, ZmAffx.388.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7087.2TaAffx.110205.1.S1_atAt5g18270--4e+0At5g05790myb family transcription factorO.I.H.G.S.X.
0.4058.4TaAffx.24129.1.S1_atAt5g18270--8e-1At1g16300GAPCP-2O.I.H.G.S.X.
0.3854.7TaAffx.106823.1.S1_x_atAt5g18270--4e+0At5g55570unknown proteinO.I.H.G.S.X.
0.3753.0Ta.20393.1.S1_x_atAt5g18270--3e-1At1g78320ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23)O.I.H.G.S.X.
0.3651.9TaAffx.26599.1.S1_atAt5g18270--4e+0At3g57690AGP23 (ARABINOGALACTAN-PROTEIN 23)O.I.H.G.S.X.
0.3549.8Ta.14479.3.S1_x_atAt5g18270--7e-18At2g05830eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinO.I.H.G.S.X.
0.3346.9Ta.3630.1.S1_atAt5g18270--6e+0At5g61230ankyrin repeat family proteinO.I.H.G.S.X.
0.3346.9Ta.3474.2.S1_x_atAt5g18270--4e+0Atmg00200-O.I.H.G.S.X.
0.3346.9Ta.20393.1.S1_atAt5g18270--3e-1At1g78320ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23)O.I.H.G.S.X.
0.3040.9Ta.3083.2.A1_atAt5g18270--4e+0At3g05602unknown proteinO.I.H.G.S.X.
0.2633.6Ta.16574.1.S1_atAt5g18270--4e+0At5g49015Expressed proteinO.I.H.G.S.X.
0.2329.0TaAffx.25411.1.S1_atAt5g18270--4e+0At4g35320unknown proteinO.I.H.G.S.X.
0.2024.0TaAffx.25126.1.S1_atAt5g18270--3e+0At3g17460PHD finger family proteinO.I.H.G.S.X.
0.1821.0TaAffx.69755.1.S1_atAt5g18270--7e+0At4g15770RNA binding / protein bindingO.I.H.G.S.X.
0.1415.8TaAffx.129222.3.S1_atAt5g18270--5e+0At5g13850NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)O.I.H.G.S.X.
0.1314.6TaAffx.115066.2.S1_atAt5g18270--4e-28At1g70600structural constituent of ribosomeO.I.H.G.S.X.
0.089.4TaAffx.80659.1.S1_atAt5g18270--1e+0At2g47320peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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