CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.388.1.A1_at

Gene name hypothetical protein LOC100279879
Homology with Arabidopsis Similar to At5g18270: ANAC087 (HF=3e+0)

Module size 6 genes

NF 0.01

%ile 0.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.85 ZmAffx.388.1.A1_at AI673984 hypothetical protein LOC100279879 - 3e+0 At5g18270 ANAC087 O.I. H.G. S.X.
0.36 41.3 0.90 ZmAffx.372.1.A1_at AI673888 anther-specific protein SF18 - 8e-1 At3g59680 unknown protein O.I. H.G. S.X.
0.04 1.5 0.88 Zm.2768.1.A1_at AW067159 Hypothetical protein LOC100193535 - 1e+0 At5g04760 myb family transcription factor O.I. H.G. S.X.
0.01 0.3 0.91 Zm.14696.2.A1_a_at AW507051 ribosome biogenesis protein NEP1 - 4e+0 At5g55990 CBL2 (CALCINEURIN B-LIKE 2) O.I. H.G. S.X.
- 0.1 0.92 Zm.16923.3.A1_at BQ619322 chlorophyll a-b binding protein 2 - 2e-50 At2g34430 LHB1B1 O.I. H.G. S.X.
- 0.1 0.89 Zm.5358.1.A1_at CF003205 ras-related protein Rab11D - 9e-1 At2g01250 60S ribosomal protein L7 (RPL7B) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.7 98.9 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4 98.9 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0 98.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7 98.6 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7 98.3 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8 97.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4 97.8 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2 97.8 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1 97.7 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1 96.8 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os12g0541400, orthologous to the query gene, ZmAffx.388.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 Os12g0541400 At5g18270 - Hypothetical protein 3e+0 At5g01300 phosphatidylethanolamine-binding family protein O.I. H.G. S.X.
0.77 93.1 Os02g0179300 At5g18270 - RAD23 protein, isoform II 9e-10 At1g16190 DNA repair protein RAD23, putative O.I. H.G. S.X.
0.67 87.2 Os07g0688800 At5g18270 - Aldehyde dehydrogenase domain containing protein 4e-22 At3g66658 ALDH22a1 (Aldehyde Dehydrogenase 22a1) O.I. H.G. S.X.
0.50 68.0 Os11g0568500 At5g18270 - Prefoldin beta-like family protein 7e-3 At3g22480 prefoldin-related KE2 family protein O.I. H.G. S.X.
0.50 68.0 Os03g0288600 At5g18270 - Muscle derived-like protein 6e-11 At5g50840 - O.I. H.G. S.X.
0.36 44.0 Os01g0710000 At5g18270 - - 8e-63 At2g19520 FVE O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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