Co-expression analysis

Gene ID ZmAffx.388.1.A1_at
Gene name hypothetical protein LOC100279879
Homology with ArabidopsisSimilar to At5g18270: ANAC087 (HF=3e+0)
Module size 6 genes
NF 0.01
%ile 0.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.85ZmAffx.388.1.A1_atAI673984hypothetical protein LOC100279879-3e+0At5g18270ANAC087O.I.H.G.S.X.
0.3641.30.90ZmAffx.372.1.A1_atAI673888anther-specific protein SF18-8e-1At3g59680unknown proteinO.I.H.G.S.X.
0.041.50.88Zm.2768.1.A1_atAW067159Hypothetical protein LOC100193535-1e+0At5g04760myb family transcription factorO.I.H.G.S.X.
0.010.30.91Zm.14696.2.A1_a_atAW507051ribosome biogenesis protein NEP1-4e+0At5g55990CBL2 (CALCINEURIN B-LIKE 2)O.I.H.G.S.X.
-0.10.92Zm.16923.3.A1_atBQ619322chlorophyll a-b binding protein 2-2e-50At2g34430LHB1B1O.I.H.G.S.X.
-0.10.89Zm.5358.1.A1_atCF003205ras-related protein Rab11D-9e-1At2g0125060S ribosomal protein L7 (RPL7B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.798.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.498.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.098.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.196.8GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HY06F11u_at, orthologous to the query gene, ZmAffx.388.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7187.1HY06F11u_atAt5g18270--9e-1At3g51300ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1)O.I.H.G.S.X.
0.8594.5Contig21985_atAt5g18270--3e+0At3g04120GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)O.I.H.G.S.X.
0.8293.1S0001000058H07F1_s_atAt5g18270--4e+0At5g50180protein kinase, putativeO.I.H.G.S.X.
0.8293.1Contig13057_atAt5g18270--2e+1At5g20060phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.8092.5Contig19126_atAt5g18270--1e+0At2g46810basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.7689.8Contig5240_atAt5g18270--4e-5At2g43030ribosomal protein L3 family proteinO.I.H.G.S.X.
0.6985.5Contig3728_atAt5g18270--9e-28At3g62560GTP-binding protein, putativeO.I.H.G.S.X.
0.6784.7Contig2200_s_atAt5g18270--2e-3At2g45650AGL6 (AGAMOUS-LIKE 6)O.I.H.G.S.X.
0.6784.7Contig17012_atAt5g18270--2e+0At2g01275zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6784.7Contig768_atAt5g18270--1e+0At1g05450protease inhibitor/seed storage/lipid transfer protein (LTP)-relatedO.I.H.G.S.X.
0.6581.4Contig10250_s_atAt5g18270--2e-5At1g04950TAF6 (TBP-ASSOCIATED FACTOR 6)O.I.H.G.S.X.
0.6480.9Contig17982_atAt5g18270--2e+1At5g05340peroxidase, putativeO.I.H.G.S.X.
0.6279.1Contig3729_atAt5g18270--7e+0At5g60560F-box family proteinO.I.H.G.S.X.
0.6279.1Contig6061_atAt5g18270--5e+0At5g17280unknown proteinO.I.H.G.S.X.
0.6178.7Contig9561_atAt5g18270--1e+1At4g15780ATVAMP724O.I.H.G.S.X.
0.5975.8Contig2339_atAt5g18270--5e-12At4g1500060S ribosomal protein L27 (RPL27C)O.I.H.G.S.X.
0.5874.9Contig10392_atAt5g18270--1e-13At1g16820vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-relatedO.I.H.G.S.X.
0.5874.9Contig12675_s_atAt5g18270--1e+0At4g28150unknown proteinO.I.H.G.S.X.
0.5167.5Contig17811_atAt5g18270--4e+0At2g05590-O.I.H.G.S.X.
0.5066.9HU14G08u_s_atAt5g18270--3e-1At5g38400unknown proteinO.I.H.G.S.X.
0.5066.9Contig18135_atAt5g18270--2e+0At5g67300MYBR1 (MYB DOMAIN PROTEIN R1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage