Co-expression analysis

Gene ID	ZmAffx.383.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g38370: phosphoglycerate/bisphosphoglycerate mutase family protein (HF=2e-1)
Module size	26 genes
NF	0.38
%ile	42.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	96.3	0.86	ZmAffx.383.1.A1_at	AI673962	-	-	2e-1	At4g38370	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.89	ZmAffx.271.1.S1_at	AI670399	-	-	1e+1	At5g09430	hydrolase	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.90	ZmAffx.617.1.S1_at	AI715045	-	-	2e-1	At5g09600	SDH3-1	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.90	ZmAffx.338.1.S1_at	AI670525	-	-	3e+0	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.90	ZmAffx.448.1.A1_at	AI677105	Hexokinase	-	3e+0	At4g29130	HXK1 (HEXOKINASE 1)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.93	RPTR-Zm-ECOLOXB_x_at	RPTR-Zm-ECOLOXB	-	-			-	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.93	RPTR-Zm-ECOLOXL_at	RPTR-Zm-ECOLOXL	-	-			-	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.90	Zm.1223.1.A1_at	AW018188	-	-	8e-20	At2g34680	AIR9	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.91	Zm.15431.1.S1_at	CO526051	hypothetical protein LOC100276766	-	1e-3	At1g80780	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.91	RPTR-Zm-ECOLOXL_x_at	RPTR-Zm-ECOLOXL	-	-			-	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.91	ZmAffx.675.1.A1_at	AI734494	-	-	3e+0	At4g24700	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.93	RPTR-Zm-J01347-3_at	RPTR-Zm-J01347-3	-	-			-	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.89	ZmAffx.1168.1.S1_s_at	AW600602	early fruit mRNA	-	2e-1	At5g16380	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.91	Zm.610.1.A1_at	AF326498.1	small basic membrane intrinsic protein1b	-	1e-1	At4g16360	AMP-activated protein kinase	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.93	RPTR-Zm-J01347-1_s_at	RPTR-Zm-J01347-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.91	RPTR-Zm-J01347-1_at	RPTR-Zm-J01347-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.90	Zm.14226.1.A1_at	BM337251	hypothetical protein LOC100273457	-	3e-2	At3g20100	CYP705A19	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.90	ZmAffx.603.1.S1_at	AI715031	-	-	1e+1	At5g05430	-	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.93	Zm.1567.1.S1_at	BG840795	-	-	2e+0	At2g40085	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.90	ZmAffx.331.1.S1_at	AI670513	-	-	6e-1	At4g26950	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.91	ZmAffx.715.1.S1_at	AI739762	-	-	2e-1	At1g04670	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.88	ZmAffx.152.1.S1_at	AI667854	-	-	5e+0	At5g07880	SNAP29	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.94	Zm.5976.2.S1_x_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.91	ZmAffx.134.1.S1_at	AI667702	-	-	3e+0	At3g53010	-	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.92	Zm.622.1.S1_at	AF342809.1	tonoplast membrane integral protein ZmTIP3-2	-	4e-2	At2g01340	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.92	ZmAffx.628.1.S1_at	AI715056	-	-	1e+1	At5g13340	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.1	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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