Co-expression analysis

Gene ID	ZmAffx.361.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g15800: unknown protein (HF=8e-1)
Module size	35 genes
NF	0.42
%ile	49.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	96.4	0.84	ZmAffx.361.1.A1_at	AI670571	-	-	8e-1	At1g15800	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.87	Zm.13913.1.S1_s_at	AF073332.1	ROA protein 1 /// replication origin activator 2 /// replication origin activator 4	-	8e-11	At5g46280	DNA replication licensing factor, putative	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.90	Zm.762.1.A1_a_at	BG349623	-	-	1e-4	At3g05740	RECQI1 (Arabidopsis RecQ helicase l1)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.89	ZmAffx.338.1.S1_at	AI670525	-	-	3e+0	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.86	Zm.9130.1.A1_at	BM268570	-	-	7e-2	At3g62220	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.88	ZmAffx.29.1.S1_at	AI657322	-	-	2e-1	At1g65445	transferase-related	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.86	ZmAffx.309.1.S1_at	AI670442	-	-	1e+1	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.90	ZmAffx.426.1.A1_at	AI676860	-	-	5e-2	At5g43210	endo/excinuclease amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.92	ZmAffx.675.1.A1_at	AI734494	-	-	3e+0	At4g24700	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.90	ZmAffx.265.1.A1_at	AI670393	-	-	3e+0	At3g45770	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.90	ZmAffx.637.1.S1_at	AI676831	-	-	2e+1	At4g31355	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.90	Zm.14226.1.A1_at	BM337251	hypothetical protein LOC100273457	-	3e-2	At3g20100	CYP705A19	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.88	RPTR-Zm-J01347-1_at	RPTR-Zm-J01347-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.88	Zm.11965.1.A1_at	BM382230	hypothetical protein LOC100275559	-	2e+0	At1g06070	bZIP transcription factor, putative (bZIP69)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.90	RPTR-Zm-ECOLOXB_x_at	RPTR-Zm-ECOLOXB	-	-			-	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.89	ZmAffx.535.1.A1_at	AI711782	-	-	2e-1	At1g23270	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.89	Zm.34.2.A1_at	AY103769.1	nuclear cap-binding protein subunit 2	-	1e-13	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.90	RPTR-Zm-ECOLOXL_at	RPTR-Zm-ECOLOXL	-	-			-	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.89	Zm.2165.1.A1_at	BM072875	hypothetical protein LOC100278701	-	6e+0	At5g25390	SHN2 (shine2)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.90	Zm.15431.1.S1_at	CO526051	hypothetical protein LOC100276766	-	1e-3	At1g80780	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.89	RPTR-Zm-J01347-3_at	RPTR-Zm-J01347-3	-	-			-	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.89	RPTR-Zm-J01347-2_at	RPTR-Zm-J01347-2	-	-			-	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.85	Zm.3966.1.A1_at	AI795713	-	-	5e-2	At1g56310	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.89	Zm.9142.1.A1_at	BM341036	-	-	4e-1	At3g23170	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.91	ZmAffx.940.1.S1_at	AI820350	hypothetical protein LOC100217004	-	8e-4	At4g00690	ULP1B (UB-LIKE PROTEASE 1B)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.86	Zm.16892.3.S1_a_at	CB281906	calmodulin binding protein	-	5e-3	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.92	ZmAffx.434.1.A1_at	AI676950	gpm2 protein	-	2e-1	At3g01790	ribosomal protein L13 family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.90	Zm.18072.1.A1_at	CF626927	guanine nucleotide-binding protein beta subunit-like protein 1	-	6e-1	At4g29860	EMB2757 (EMBRYO DEFECTIVE 2757)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.84	ZmAffx.740.1.A1_at	AI740113	hypothetical protein LOC100192706	-	3e+0	At3g53630	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.90	Zm.10046.1.A1_at	BM379106	-	-	2e-1	At5g13120	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.88	Zm.889.2.S1_at	CD439290	-	-	4e-20	At4g38740	ROC1 (ROTAMASE CYP 1)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.88	Zm.1079.6.A1_at	CF634247	carbonic anhydrase	-	5e-1	At1g56550	UDP-xylosyltransferase	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.92	Zm.10129.1.A1_at	BM267811	N-acetyltransferase	-	2e+1	At5g57750	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.94	Zm.622.1.S1_at	AF342809.1	tonoplast membrane integral protein ZmTIP3-2	-	4e-2	At2g01340	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.89	RPTR-Zm-U89963-1_x_at	RPTR-Zm-U89963-1	-	-			-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.6	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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