Co-expression analysis

Gene ID	ZmAffx.355.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g77890: unknown protein (HF=3e+0)
Module size	11 genes
NF	0.12
%ile	7.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	90.3	0.78	ZmAffx.355.1.A1_at	AI670542	-	-	3e+0	At1g77890	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.79	ZmAffx.32.1.S1_at	AI657422	-	-	3e+0	At1g12020	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.88	ZmAffx.62.1.A1_at	AI665108	coronatine-insensitive protein 1	-	3e+0	At2g01370	DNA-binding storekeeper protein-related	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.87	ZmAffx.651.1.A1_at	AI715079	-	-	1e+1	At5g39580	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.88			-	-				O.I.	H.G.	S.X.	Please select
0.12	5.9	0.91	ZmAffx.306.1.A1_at	AI670439	-	-	2e+0	At1g36020	-	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.90	Zm.9557.1.A1_at	BI423687	Glycine cleavage H-protein	-	2e-2	At1g32470	glycine cleavage system H protein, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.87	Zm.9142.1.A1_at	BM341036	-	-	4e-1	At3g23170	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.85	ZmAffx.809.1.S1_at	AI770393	protein binding protein	-	4e+0	At4g25080	CHLM (magnesium-protoporphyrin IX methyltransferase)	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.87	ZmAffx.723.1.S1_at	AI739914	-	-	8e-1	At3g07150	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	1.5	0.83	ZmAffx.427.1.A1_at	AI676861	-	-	8e-1	At5g64670	ribosomal protein L15 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.2	99.2	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage