Co-expression analysis

Gene ID	ZmAffx.33.1.A1_at
Gene name	t-snare
Homology with Arabidopsis	Similar to At4g00890: proline-rich family protein (HF=2e-1)
Module size	7 genes
NF	0.50
%ile	64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	61.3	0.93	ZmAffx.33.1.A1_at	AI657429	t-snare	-	2e-1	At4g00890	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.86	96.3	0.95	Zm.13452.2.A1_at	AY105619.1	zinc transporter 4	-	5e-4	At3g12750	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	ZmAffx.715.1.A1_s_at	AI739762	-	-	2e-1	At1g04670	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.95	ZmAffx.195.1.S1_at	AI668458	-	-	1e+1	At5g21005	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.95	Zm.10252.1.A1_at	AY108029.1	hypothetical protein LOC100279693	-	2e+0	At5g02750	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.1039.2.A1_at	CF384547	-	-	2e+0	At3g59270	syntaxin-related family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	ZmAffx.937.1.S1_at	AI820257	-	-	8e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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