Co-expression analysis

Gene ID ZmAffx.300.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g44735: - (HF=8e-1)
Module size 34 genes
NF 0.37
%ile 40.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9399.30.85ZmAffx.300.1.A1_atAI670433--8e-1At2g44735-O.I.H.G.S.X.
0.6886.10.89ZmAffx.249.1.A1_atAI670263--3e+0At1g48020PMEI1 (PECTIN METHYLESTERASE INHIBITOR 1)O.I.H.G.S.X.
0.5369.10.90Zm.9763.1.A1_atBM338608--1e+0At3g10590myb family transcription factorO.I.H.G.S.X.
0.5166.40.91ZmAffx.434.1.A1_atAI676950gpm2 protein-2e-1At3g01790ribosomal protein L13 family proteinO.I.H.G.S.X.
0.5065.70.86ZmAffx.347.1.A1_atAI670534--1e+1At4g01995unknown proteinO.I.H.G.S.X.
0.4961.90.87Zm.1116.1.S1_atAY109800.1--2e+0At1g03180unknown proteinO.I.H.G.S.X.
0.4759.90.94Zm.622.1.S1_atAF342809.1tonoplast membrane integral protein ZmTIP3-2-4e-2At2g01340unknown proteinO.I.H.G.S.X.
0.4759.90.91Zm.18072.1.A1_atCF626927guanine nucleotide-binding protein beta subunit-like protein 1-6e-1At4g29860EMB2757 (EMBRYO DEFECTIVE 2757)O.I.H.G.S.X.
0.4556.40.89ZmAffx.314.1.A1_atAI670496--3e+0At3g45960ATEXLA3 (arabidopsis thaliana expansin-like a3)O.I.H.G.S.X.
0.4455.70.92ZmAffx.19.1.A1_atAI586648PWWP domain containing protein-1e+1At1g48745unknown proteinO.I.H.G.S.X.
0.4455.70.88ZmAffx.622.1.S1_atAI715050--1e+1At2g44370DC1 domain-containing proteinO.I.H.G.S.X.
0.4455.70.90Zm.10046.1.A1_atBM379106--2e-1At5g13120peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.
0.4352.80.89ZmAffx.940.1.S1_atAI820350hypothetical protein LOC100217004-8e-4At4g00690ULP1B (UB-LIKE PROTEASE 1B)O.I.H.G.S.X.
0.3844.20.87ZmAffx.334.1.A1_atAI670520--1e+1At3g23440EDA6 (EMBRYO SAC DEVELOPMENT ARREST 6)O.I.H.G.S.X.
0.3742.30.87ZmAffx.664.1.S1_atAI734304--4e+0At1g08790unknown proteinO.I.H.G.S.X.
0.3742.30.91Zm.16259.3.A1_a_atAI395995hypothetical protein LOC100273269-2e+0At3g20865AGP40 (arabinogalactan-protein 40)O.I.H.G.S.X.
0.3742.30.92RPTR-Zm-U89963-1_x_atRPTR-Zm-U89963-1---O.I.H.G.S.X.
0.3641.30.90ZmAffx.302.1.A1_atAI670435--8e-1At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.3538.90.89ZmAffx.265.1.A1_atAI670393--3e+0At3g45770oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.3437.20.90Zm.762.1.A1_a_atBG349623--1e-4At3g05740RECQI1 (Arabidopsis RecQ helicase l1)O.I.H.G.S.X.
0.3437.20.91ZmAffx.96.1.S1_atAI665410--1e+1At4g39130dehydrin family proteinO.I.H.G.S.X.
0.3336.00.94ZmAffx.609.1.S1_atAI715037--3e+0At2g26520unknown proteinO.I.H.G.S.X.
0.3336.00.90Zm.14226.1.A1_atBM337251hypothetical protein LOC100273457-3e-2At3g20100CYP705A19O.I.H.G.S.X.
0.3233.40.90ZmAffx.637.1.S1_atAI676831--2e+1At4g31355unknown proteinO.I.H.G.S.X.
0.3131.60.91Zm.5976.2.S1_x_atBG265782--3e+0At5g4008060S ribosomal protein-relatedO.I.H.G.S.X.
0.2928.10.92ZmAffx.33.1.A1_atAI657429t-snare-2e-1At4g00890proline-rich family proteinO.I.H.G.S.X.
0.2928.10.91ZmAffx.302.1.S1_atAI670435--8e-1At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.2928.10.92ZmAffx.144.1.S1_atAI667795--8e-1At3g57390AGL18O.I.H.G.S.X.
0.2622.70.92Zm.10252.1.A1_atAY108029.1hypothetical protein LOC100279693-2e+0At5g02750zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2419.80.89ZmAffx.628.1.S1_atAI715056--1e+1At5g13340unknown proteinO.I.H.G.S.X.
0.2216.90.91Zm.16180.1.A1_atAW091200--5e-2At2g28440proline-rich family proteinO.I.H.G.S.X.
0.2216.90.91Zm.13452.2.A1_atAY105619.1zinc transporter 4-5e-4At3g12750ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)O.I.H.G.S.X.
0.2115.50.92ZmAffx.890.1.S1_atAI770846protein dimerization-3e+0At5g37240unknown proteinO.I.H.G.S.X.
0.1912.80.92Zm.17799.1.A1_atCK371356--3e-1At1g80890unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.799.5GSM320471protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320467protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.498.7GSM320465protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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