Co-expression analysis

Gene ID	ZmAffx.273.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g22900: NRPD7 (HF=1e+1)
Module size	20 genes
NF	0.39
%ile	43.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	86.1	0.84	ZmAffx.273.1.A1_at	AI670401	-	-	1e+1	At3g22900	NRPD7	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.94	Zm.10129.1.A1_at	BM267811	N-acetyltransferase	-	2e+1	At5g57750	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.92	ZmAffx.519.1.S1_at	AI711610	Hypothetical protein LOC100193190	-	3e+0	At3g21352	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.92	Zm.1223.1.A1_at	AW018188	-	-	8e-20	At2g34680	AIR9	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.90	ZmAffx.679.1.A1_at	AI734614	Hypothetical protein LOC100191777	-	5e-2	At2g36100	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.92	Zm.10046.1.A1_at	BM379106	-	-	2e-1	At5g13120	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.93	ZmAffx.19.1.A1_at	AI586648	PWWP domain containing protein	-	1e+1	At1g48745	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.91	ZmAffx.519.1.A1_at	AI711610	hypothetical protein LOC100193190	-	3e+0	At3g21352	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	ZmAffx.134.1.S1_at	AI667702	-	-	3e+0	At3g53010	-	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.93	ZmAffx.1325.1.S1_at	40794996-35	-	-	4e-2	At1g49910	WD-40 repeat family protein / mitotic checkpoint protein, putative	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.91	ZmAffx.535.1.A1_at	AI711782	-	-	2e-1	At1g23270	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.95	Zm.1567.1.S1_at	BG840795	-	-	2e+0	At2g40085	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.90	ZmAffx.331.1.S1_at	AI670513	-	-	6e-1	At4g26950	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.92	Zm.5976.2.S1_x_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.92	RPTR-Zm-U89963-1_x_at	RPTR-Zm-U89963-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.94	ZmAffx.144.1.S1_at	AI667795	-	-	8e-1	At3g57390	AGL18	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.92	ZmAffx.609.1.S1_at	AI715037	-	-	3e+0	At2g26520	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.91	ZmAffx.1326.1.S1_at	40794996-148	-	-	0	Atmg00570	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.92	ZmAffx.690.1.A1_at	AI737303	-	-	1e+1	At5g64040	PSAN	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.96	ZmAffx.1522.1.S1_s_at	11990232-59	-	-	3e-38	Atcg00800	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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