Co-expression analysis

Gene ID	ZmAffx.270.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g02730: transducin family protein / WD-40 repeat family protein (HF=8e-1)
Module size	45 genes
NF	0.48
%ile	60.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	0.79	ZmAffx.270.1.A1_at	AI670398	-	-	8e-1	At4g02730	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.80	Zm.16504.2.A1_at	CD438012	heat shock protein18c	-	6e+0	At1g19910	AVA-P2	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.91	ZmAffx.452.1.A1_at	AI677152	-	-	3e-6	At3g03380	DegP7 (DegP protease 7)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.82	ZmAffx.117.1.S1_at	AI665629	-	-	8e+0	At3g12835	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.90	ZmAffx.162.1.A1_at	AI668180	Hypothetical protein LOC100193115	-	2e-1	At2g27240	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.86	ZmAffx.309.1.S1_at	AI670442	-	-	1e+1	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.92	RPTR-Zm-ECOLOXL_at	RPTR-Zm-ECOLOXL	-	-			-	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.91	RPTR-Zm-J01347-3_at	RPTR-Zm-J01347-3	-	-			-	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.91	RPTR-Zm-ECOLOXB_x_at	RPTR-Zm-ECOLOXB	-	-			-	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.88	Zm.34.2.A1_at	AY103769.1	nuclear cap-binding protein subunit 2	-	1e-13	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.79	ZmAffx.257.1.S1_at	AI670300	-	-	8e-1	At5g66090	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.92	Zm.11965.1.A1_at	BM382230	hypothetical protein LOC100275559	-	2e+0	At1g06070	bZIP transcription factor, putative (bZIP69)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.91	RPTR-Zm-J01347-1_s_at	RPTR-Zm-J01347-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.86	Zm.2856.1.A1_at	AW076433	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1	-	9e-34	At2g35620	FEI2 (FEI 2)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.84	ZmAffx.366.1.A1_at	AI673846	-	-	5e+0	At3g63350	AT-HSFA7B	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.84	ZmAffx.641.1.A1_at	AI715069	-	-	3e+0	Atmg01350	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.87	RPTR-Zm-J01347-2_at	RPTR-Zm-J01347-2	-	-			-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.84	Zm.13899.1.S1_x_at	AF099383.1	R2R3MYB-domain protein	-	6e-2	At4g37780	MYB87 (MYB DOMAIN PROTEIN 87)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.90	RPTR-Zm-ECOLOXL_x_at	RPTR-Zm-ECOLOXL	-	-			-	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.83	ZmAffx.390.1.A1_at	AI676818	-	-	3e+0	At2g03955	-	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.92	ZmAffx.1417.1.S1_at	40794996-92	-	-	0	Atmg00830	-	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.87	RPTR-Zm-J01347-1_at	RPTR-Zm-J01347-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.85	ZmAffx.782.1.S1_at	AI759014	-	-	8e-1	At2g46455	-	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.91	ZmAffx.265.1.A1_at	AI670393	-	-	3e+0	At3g45770	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.90	Zm.3966.1.A1_at	AI795713	-	-	5e-2	At1g56310	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.82	ZmAffx.332.1.A1_at	AI670515	-	-	3e+0	At3g27920	ATMYB0 (MYB DOMAIN PROTEIN 0)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.89	Zm.19194.1.A1_at	CO519708	-	-	1e-11	At3g10050	OMR1 (L-O-METHYLTHREONINE RESISTANT 1)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.88	ZmAffx.740.1.A1_at	AI740113	hypothetical protein LOC100192706	-	3e+0	At3g53630	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.82	ZmAffx.33.1.S1_at	AI657429	-	-	2e-1	At4g00890	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.85	ZmAffx.314.1.S1_at	AI670496	-	-	3e+0	At3g45960	ATEXLA3 (arabidopsis thaliana expansin-like a3)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.89	ZmAffx.740.1.S1_at	AI740113	Hypothetical protein LOC100192706	-	3e+0	At3g53630	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.92	ZmAffx.183.1.S1_at	AI668346	-	-	3e+0	At5g57510	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.92	Zm.17308.1.A1_a_at	CF625691	-	-	2e+0	At1g64350	SEH1H	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.92	Zm.17308.1.A1_at	CF625691	-	-	2e+0	At1g64350	SEH1H	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.82	ZmAffx.357.1.A1_at	AI670544	-	-	6e-1	At5g67070	RALFL34 (ralf-like 34)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.91	ZmAffx.334.1.A1_at	AI670520	-	-	1e+1	At3g23440	EDA6 (EMBRYO SAC DEVELOPMENT ARREST 6)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.91	ZmAffx.637.1.S1_at	AI676831	-	-	2e+1	At4g31355	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.91	Zm.14226.1.A1_at	BM337251	hypothetical protein LOC100273457	-	3e-2	At3g20100	CYP705A19	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.84	Zm.9705.1.A1_at	BM337591	-	-	5e+0	At3g43970	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.90	Zm.15431.1.S1_at	CO526051	hypothetical protein LOC100276766	-	1e-3	At1g80780	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.86	Zm.16892.3.S1_a_at	CB281906	calmodulin binding protein	-	5e-3	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.91	ZmAffx.535.1.A1_at	AI711782	-	-	2e-1	At1g23270	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.83	ZmAffx.655.1.A1_at	AI715083	-	-	8e-1	At4g31320	auxin-responsive protein, putative / small auxin up RNA (SAUR_C)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.87	ZmAffx.622.1.S1_at	AI715050	-	-	1e+1	At2g44370	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.87	ZmAffx.29.1.S1_at	AI657322	-	-	2e-1	At1g65445	transferase-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.0	99.0	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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