Co-expression analysis

Gene ID	ZmAffx.160.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g24380: unknown protein (HF=8e-1)
Module size	6 genes
NF	0.53
%ile	69.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.80	ZmAffx.160.1.A1_at	AI668152	-	-	8e-1	At4g24380	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.81	Zm.3132.1.A1_at	BE512386	hypothetical protein LOC100273996	-	1e-7	At3g02510	regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.82	ZmAffx.1187.1.A1_at	BE012211	-	-	3e+0	At4g29033	-	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.81	Zm.18381.1.A1_s_at	CO523274	Hypothetical protein LOC100216796	-	4e-1	At3g03720	CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.78	Zm.1140.1.S1_at	BM073428	hypothetical protein LOC100279272	-	4e-14	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.80	ZmAffx.195.1.A1_at	AI668458	-	-	1e+1	At5g21005	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.7	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the grape gene, 1619638_at, orthologous to the query gene, ZmAffx.160.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	91.3	1619638_at	At4g24380	hypothetical protein LOC100243143	-	1e-1	At3g19900	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1615269_at	At4g24380	hypothetical protein LOC100245841	-	1e+0	At4g15250	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	1612622_at	At4g24380	hypothetical protein LOC100244545	-	4e+0	At5g27170	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1606528_at	At4g24380	hypothetical protein LOC100241598	-	2e-8	At1g07480	transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1612467_at	At4g24380	-	-	4e+0	At4g25690	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1611403_at	At4g24380	hypothetical protein LOC100241204	-	2e+0	At4g22310	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1612909_at	At4g24380	hypothetical protein LOC100264659	-	3e-8	At3g28970	AAR3 (antiauxin-resistant 3)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1611670_at	At4g24380	hypothetical protein LOC100241885	-	9e-70	At5g54750	transport protein particle (TRAPP) component Bet3, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	1621445_at	At4g24380	similar to ftsH-like protease	-	2e-1	At5g50830	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1609821_at	At4g24380	-	-	5e-6	At3g60250	CKB3	O.I.	H.G.	S.X.	Please select
0.17	18.2	1609191_s_at	At4g24380	hypothetical protein LOC100258056	-	0	At5g26751	ATSK11	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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