Co-expression analysis

Gene ID ZmAffx.1538.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g21730: dihydroneopterin aldolase family protein (HF=3e+0)
Module size 6 genes
NF 0.94
%ile 99.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98ZmAffx.1538.1.S1_at40794996-128--3e+0At3g21730dihydroneopterin aldolase family proteinO.I.H.G.S.X.
0.9199.00.98ZmAffx.1501.1.S1_at40794996-118--8e-1At5g12300C2 domain-containing proteinO.I.H.G.S.X.
0.8395.60.98ZmAffx.1486.1.S1_at11990232-43--3e-56Atcg00650-O.I.H.G.S.X.
0.8395.60.98ZmAffx.1143.1.S1_atAW399931--8e+0At5g01340mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.8395.60.98ZmAffx.1480.1.S1_at40794996-107--1e+1At5g1520040S ribosomal protein S9 (RPS9B)O.I.H.G.S.X.
0.8395.60.98ZmAffx.1357.1.S1_at40794996-46--2e-1At1g26921unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.199.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
22.599.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
21.099.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.699.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.499.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
19.199.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.899.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.499.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.899.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320460protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1617088_at, orthologous to the query gene, ZmAffx.1538.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6988.31617088_atAt3g21730hypothetical protein LOC100245381-1e-31At4g35230BSK1 (BR-SIGNALING KINASE 1)O.I.H.G.S.X.
0.5072.71614103_atAt3g21730hypothetical protein LOC100257061-2e-2At3g12140emsy N terminus domain-containing protein / ENT domain-containing proteinO.I.H.G.S.X.
0.5072.71619145_s_atAt3g21730hypothetical protein LOC100250496-6e-36At2g27050EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)O.I.H.G.S.X.
0.4666.51615691_atAt3g21730hypothetical protein LOC100251732-9e-56At4g03430EMB2770 (EMBRYO DEFECTIVE 2770)O.I.H.G.S.X.
0.4464.11614563_atAt3g21730hypothetical protein LOC100250772-1e-10At1g22280protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.4361.51611180_atAt3g21730hypothetical protein LOC100263350-5e+0At3g28455CLE25 (CLAVATA3/ESR-RELATED 25)O.I.H.G.S.X.
0.4057.71608789_atAt3g21730hypothetical protein LOC100258912-2e-16At2g47070SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1)O.I.H.G.S.X.
0.3853.61613738_atAt3g21730hypothetical protein LOC100265879-6e-1At3g25420scpl21 (serine carboxypeptidase-like 21)O.I.H.G.S.X.
0.3446.81613129_atAt3g21730hypothetical protein LOC100266068-2e-13At4g17330ATG2484-1O.I.H.G.S.X.
0.2937.71607202_s_atAt3g21730hypothetical protein LOC100242295-2e-65At5g23090NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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