Co-expression analysis

Gene ID ZmAffx.1536.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g61390: U-box domain-containing protein (HF=1e+1)
Module size 6 genes
NF 0.72
%ile 93.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.96ZmAffx.1536.1.S1_at40794996-127--1e+1At3g61390U-box domain-containing proteinO.I.H.G.S.X.
0.8395.60.96ZmAffx.1356.1.S1_at40794996-158--3e+0At5g5795026S proteasome regulatory subunit, putativeO.I.H.G.S.X.
0.7188.20.97ZmAffx.1511.1.S1_at11990232-52--4e-48Atcg00740-O.I.H.G.S.X.
0.6785.80.96ZmAffx.766.1.S1_atAI746089Hypothetical protein LOC100191384-3e+0At3g12320unknown proteinO.I.H.G.S.X.
0.5369.10.97ZmAffx.1357.1.S1_at40794996-46--2e-1At1g26921unknown proteinO.I.H.G.S.X.
0.5369.10.96ZmAffx.1480.1.S1_at40794996-107--1e+1At5g1520040S ribosomal protein S9 (RPS9B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.499.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.699.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.599.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.299.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.199.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.599.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.599.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.598.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.498.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320459protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1609912_at, orthologous to the query gene, ZmAffx.1536.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7792.31609912_atAt3g61390hypothetical protein LOC100249144-5e+0At2g44820unknown proteinO.I.H.G.S.X.
0.6787.91607636_atAt3g61390hypothetical protein LOC100259635-4e-104At5g03240UBQ3 (POLYUBIQUITIN 3)O.I.H.G.S.X.
0.6384.31615711_atAt3g61390hypothetical protein LOC100267267-4e-20At3g44330-O.I.H.G.S.X.
0.5879.81619846_atAt3g61390hypothetical protein LOC100247893-3e-11At2g39140SVR1 (SUPPRESSOR OF VARIEGATION 1)O.I.H.G.S.X.
0.3853.61620219_atAt3g61390hypothetical protein LOC100247027-2e+0At3g14560unknown proteinO.I.H.G.S.X.
0.3446.81613133_atAt3g61390similar to putative C-type U1 snRNP-2e-31At4g03120proline-rich family proteinO.I.H.G.S.X.
0.3141.31617842_atAt3g61390hypothetical protein LOC100244069-8e-3At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.3039.41615482_atAt3g61390hypothetical protein LOC100257601-7e-10At3g47560esterase/lipase/thioesterase family proteinO.I.H.G.S.X.
0.2632.01613620_atAt3g61390hypothetical protein LOC100255785-2e-40At3g49420Got1-like family proteinO.I.H.G.S.X.
0.1819.41611028_atAt3g61390hypothetical protein LOC100252311-1e+0At3g17560F-box family proteinO.I.H.G.S.X.
0.1819.41609013_atAt3g61390hypothetical protein LOC100256014-6e+0At5g42242LCR57 (Low-molecular-weight cysteine-rich 57)O.I.H.G.S.X.
0.1515.61607251_atAt3g61390hypothetical protein LOC100264817-3e-19At4g31720TAFII15 (TBP-ASSOCIATED FACTOR II 15)O.I.H.G.S.X.
0.1313.31617657_atAt3g61390similar to Serine/threonine protein phosphatase 5-1e-21At2g42810PP5.2 (PROTEIN PHOSPHATASE 5.2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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