Co-expression analysis

Gene ID ZmAffx.1536.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g61390: U-box domain-containing protein (HF=1e+1)
Module size 6 genes
NF 0.72
%ile 93.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.96ZmAffx.1536.1.S1_at40794996-127--1e+1At3g61390U-box domain-containing proteinO.I.H.G.S.X.
0.8395.60.96ZmAffx.1356.1.S1_at40794996-158--3e+0At5g5795026S proteasome regulatory subunit, putativeO.I.H.G.S.X.
0.7188.20.97ZmAffx.1511.1.S1_at11990232-52--4e-48Atcg00740-O.I.H.G.S.X.
0.6785.80.96ZmAffx.766.1.S1_atAI746089Hypothetical protein LOC100191384-3e+0At3g12320unknown proteinO.I.H.G.S.X.
0.5369.10.97ZmAffx.1357.1.S1_at40794996-46--2e-1At1g26921unknown proteinO.I.H.G.S.X.
0.5369.10.96ZmAffx.1480.1.S1_at40794996-107--1e+1At5g1520040S ribosomal protein S9 (RPS9B)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.499.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.699.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.599.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.299.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.199.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.599.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.599.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.598.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.498.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320459protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.171.1.A1_at, orthologous to the query gene, ZmAffx.1536.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.2Ptp.171.1.A1_atAt3g61390glutaredoxin-9e-2At2g30540glutaredoxin family proteinO.I.H.G.S.X.
0.5078.6PtpAffx.204875.1.S1_s_atAt3g61390hypothetical protein-2e-22At5g19855unknown proteinO.I.H.G.S.X.
0.3559.7PtpAffx.7684.1.A1_atAt3g61390hypothetical protein-9e-14At4g38970fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.3357.5PtpAffx.120741.1.A1_atAt3g61390hypothetical protein-3e-5At3g15270SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)O.I.H.G.S.X.
0.2747.1Ptp.1037.1.S1_s_atAt3g61390beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein-9e-4At1g07720KCS3 (3-KETOACYL-COA SYNTHASE 3)O.I.H.G.S.X.
0.2136.5PtpAffx.8523.4.A1_atAt3g61390--9e-24At1g55360unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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