Co-expression analysis

Gene ID ZmAffx.1536.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g61390: U-box domain-containing protein (HF=1e+1)
Module size 6 genes
NF 0.72
%ile 93.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.96ZmAffx.1536.1.S1_at40794996-127--1e+1At3g61390U-box domain-containing proteinO.I.H.G.S.X.
0.8395.60.96ZmAffx.1356.1.S1_at40794996-158--3e+0At5g5795026S proteasome regulatory subunit, putativeO.I.H.G.S.X.
0.7188.20.97ZmAffx.1511.1.S1_at11990232-52--4e-48Atcg00740-O.I.H.G.S.X.
0.6785.80.96ZmAffx.766.1.S1_atAI746089Hypothetical protein LOC100191384-3e+0At3g12320unknown proteinO.I.H.G.S.X.
0.5369.10.97ZmAffx.1357.1.S1_at40794996-46--2e-1At1g26921unknown proteinO.I.H.G.S.X.
0.5369.10.96ZmAffx.1480.1.S1_at40794996-107--1e+1At5g1520040S ribosomal protein S9 (RPS9B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.499.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.699.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.599.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.299.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.199.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.599.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.599.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.598.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.498.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320459protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig20794_at, orthologous to the query gene, ZmAffx.1536.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7388.7Contig20794_atAt3g61390--5e+0At3g60010ASK13 (ARABIDOPSIS SKP1-LIKE 13)O.I.H.G.S.X.
0.8694.8Contig24237_atAt3g61390--1e+1At5g58990unknown proteinO.I.H.G.S.X.
0.8394.0Contig24229_atAt3g61390--3e-1At1g69526UbiE/COQ5 methyltransferase family proteinO.I.H.G.S.X.
0.8092.5Contig24217_atAt3g61390--2e+0At5g55320membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-relatedO.I.H.G.S.X.
0.8092.5EBro04_SQ004_O07a_atAt3g61390--4e+0At5g10946unknown proteinO.I.H.G.S.X.
0.7991.4Contig4426_atAt3g61390--9e-7At3g28200peroxidase, putativeO.I.H.G.S.X.
0.7589.5Contig25630_atAt3g61390--1e-6At5g12900unknown proteinO.I.H.G.S.X.
0.6985.5Contig14888_atAt3g61390--6e-65At2g21150XCT (XAP5 CIRCADIAN TIMEKEEPER)O.I.H.G.S.X.
0.6784.7Contig4186_atAt3g61390--3e-4At3g17160unknown proteinO.I.H.G.S.X.
0.6279.1Contig10555_atAt3g61390--9e-3At2g01060myb family transcription factorO.I.H.G.S.X.
0.6077.3Contig18735_atAt3g61390--1e+0At5g24560AtPP2-B12 (Phloem protein 2-B12)O.I.H.G.S.X.
0.5975.8Contig20834_atAt3g61390--3e-1At2g05330speckle-type POZ protein-relatedO.I.H.G.S.X.
0.5874.9Contig2395_atAt3g61390--1e+0At5g49300zinc finger (GATA type) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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