Co-expression analysis

Gene ID ZmAffx.1521.1.S1_at
Gene name
Homology with ArabidopsisSimilar to Atcg00790: - (HF=1e-70)
Module size 6 genes
NF 0.43
%ile 50.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.20.94ZmAffx.1521.1.S1_at11990232-58--1e-70Atcg00790-O.I.H.G.S.X.
0.6077.80.95Zm.19028.1.S1_atT18786hypothetical protein LOC100192863-4e-2At4g19270unknown proteinO.I.H.G.S.X.
0.5369.10.95Zm.9088.1.A1_atCB350848--1e+0At2g06908unknown proteinO.I.H.G.S.X.
0.4658.40.95Zm.652.1.S1_atAY029559.1methyl binding domain-2e-1At5g17870PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)O.I.H.G.S.X.
0.3336.00.93Zm.8383.1.A1_atBM078678PCO062666 protein-4e-1At5g47960ATRABA4CO.I.H.G.S.X.
0.147.70.93ZmAffx.130.1.A1_atAI666022--3e+0At5g14750ATMYB66 (MYB DOMAIN PROTEIN 66)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6381.10.90ZmAffx.437.1.A1_atAI676955Hypothetical protein LOC100193309-3e+0At2g26130zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6179.50.94Zm.15780.1.A1_atCD484576--4e+0At3g01472CPuORF33 (Conserved peptide upstream open reading frame 33)O.I.H.G.S.X.
0.5674.40.85ZmAffx.247.1.S1_atAI670259--8e-1At1g21830unknown proteinO.I.H.G.S.X.
0.5369.10.83Zm.289.1.S1_atCD435530rop6 protein-1e-11At5g62880ARAC10O.I.H.G.S.X.
0.5369.10.85Zm.10169.1.S1_atAI795322--1e+0At2g04039unknown proteinO.I.H.G.S.X.
0.5065.70.93Zm.6364.1.S1_atT20372--8e-1At2g22060-O.I.H.G.S.X.
0.4455.70.87Zm.5851.4.A1_atCF042267hypothetical protein LOC100272411-6e-1At5g02120OHP (ONE HELIX PROTEIN)O.I.H.G.S.X.
0.4455.70.90ZmAffx.255.1.A1_atAI670293--6e-2At2g05510glycine-rich proteinO.I.H.G.S.X.
0.4455.70.93Zm.12152.1.S1_atCK394699hypothetical protein LOC100274505-1e-5At1g63120ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)O.I.H.G.S.X.
0.4048.50.84Zm.8897.1.S1_atBM079371hypothetical protein LOC100193770-3e-3At1g764703-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductaseO.I.H.G.S.X.
0.4048.50.90Zm.9653.1.A1_atBM335707--7e-2At5g23170protein kinase family proteinO.I.H.G.S.X.
0.3844.20.86ZmAffx.352.1.S1_x_atAI670499--3e+0At2g01505CLE16 (CLAVATA3/ESR-RELATED 16)O.I.H.G.S.X.
0.3844.20.86ZmAffx.366.1.S1_atAI673846--5e+0At3g63350AT-HSFA7BO.I.H.G.S.X.
0.3641.30.93Zm.9514.1.A1_atBM269476hypothetical protein LOC100279704-3e-1At2g14500F-box family proteinO.I.H.G.S.X.
0.3641.30.95Zm.15448.1.S1_atCD448349plastidic phosphate translocator-like protein1-4e-24At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.3538.90.92Zm.10002.1.A1_a_atBM351261--2e+0At1g67060unknown proteinO.I.H.G.S.X.
0.3538.90.94Zm.9745.1.A1_atBM341408--2e+1At5g24570unknown proteinO.I.H.G.S.X.
0.3538.90.90Zm.3757.1.A1_atCB351276ferredoxin-3-1e+0At4g00670DNA bindingO.I.H.G.S.X.
0.3538.90.93Zm.2165.1.A1_atBM072875hypothetical protein LOC100278701-6e+0At5g25390SHN2 (shine2)O.I.H.G.S.X.
0.3336.00.85Zm.4377.2.A1_atAI714705hypothetical protein LOC100193789-2e-4At1g17280UBC34 (ubiquitin-conjugating enzyme 34)O.I.H.G.S.X.
0.3336.00.88ZmAffx.19.1.S1_atAI586648--1e+1At1g48745unknown proteinO.I.H.G.S.X.
0.3233.40.88Zm.654.1.A1_atAY029561.1hypothetical LOC542071-1e-3At5g35330MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)O.I.H.G.S.X.
0.3131.60.84Zm.12685.1.A1_atBU571612--4e+0At5g36925unknown proteinO.I.H.G.S.X.
0.3131.60.93Zm.1079.6.A1_atCF634247carbonic anhydrase-5e-1At1g56550UDP-xylosyltransferaseO.I.H.G.S.X.
0.3029.80.89Zm.6662.1.A1_a_atAY108391.150S ribosomal protein L20-3e-5At1g16740ribosomal protein L20 family proteinO.I.H.G.S.X.
0.3029.80.93Zm.16892.1.A1_atCO520304calmodulin binding protein-2e-2At3g22190IQD5 (IQ-domain 5)O.I.H.G.S.X.
0.3029.80.88ZmAffx.1156.1.S1_s_atAW433382--1e-131Atcg00340-O.I.H.G.S.X.
0.2928.10.89ZmAffx.657.2.A1_atAI715078--5e+0At1g15180MATE efflux family proteinO.I.H.G.S.X.
0.2928.10.91Zm.957.2.A1_atCB381158prefoldin subunit 6-1e-1At2g35430zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.2928.10.94Zm.16502.5.A1_atAI586439hypothetical protein LOC100280237-1e-12At5g61780tudor domain-containing protein / nuclease family proteinO.I.H.G.S.X.
0.2828.10.86ZmAffx.421.1.S1_atAI676853--3e+0At3g28950avirulence-responsive protein-related / avirulence induced gene (AIG) protein-relatedO.I.H.G.S.X.
0.2724.60.88ZmAffx.632.1.S1_atAI715060--3e+0At2g31370bZIP transcription factor (POSF21)O.I.H.G.S.X.
0.2622.70.89Zm.4140.1.S1_atBE552528hypothetical protein LOC100191980-2e-17At1g69790protein kinase, putativeO.I.H.G.S.X.
0.2521.30.85ZmAffx.26.1.S1_atAI62197630S ribosomal protein S7-5e-37Atcg00900-O.I.H.G.S.X.
0.2521.30.86Zm.10020.1.A1_atBM332083--4e-1At1g36940unknown proteinO.I.H.G.S.X.
0.2521.30.87ZmAffx.849.1.S1_atAI770638succinyl-CoA ligase beta-chain-6e-14At2g20420succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putativeO.I.H.G.S.X.
0.2521.30.94Zm.2940.1.A1_atAW360572--4e-5At1g56500haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.798.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320461protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320462protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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