Co-expression analysis

Gene ID	ZmAffx.1511.1.S1_at
Gene name
Homology with Arabidopsis	Similar to Atcg00740: - (HF=4e-48)
Module size	6 genes
NF	0.76
%ile	95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	ZmAffx.1511.1.S1_at	11990232-52	-	-	4e-48	Atcg00740	-	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	ZmAffx.1471.1.S1_at	11990232-38	-	-	9e-89	Atcg00580	-	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.97	ZmAffx.1357.1.S1_at	40794996-46	-	-	2e-1	At1g26921	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.96	ZmAffx.1356.1.S1_at	40794996-158	-	-	3e+0	At5g57950	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.96	ZmAffx.1486.1.S1_at	11990232-43	-	-	3e-56	Atcg00650	-	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	ZmAffx.1480.1.S1_at	40794996-107	-	-	1e+1	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.5	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os01g0789400, orthologous to the query gene, ZmAffx.1511.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.9	Os01g0789400	Atcg00740	-	Alpha subunit of RNA polymerase	2e-50	Atcg00740	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	Os10g0356366	Atcg00740	-	-	3e-30	Atcg00510	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os10g0527100	Atcg00740	-	Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV)	2e+0	At5g15850	COL1 (constans-like 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os05g0292600	Atcg00740	-	Chloroplast 50S ribosomal protein L14	5e-68	Atcg00780	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os01g0792400	Atcg00740	-	Photosystem I assembly protein ycf4	2e-53	Atcg00520	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os04g0235600	Atcg00740	-	ATP synthase B chain (EC 3.6.3.14) (Subunit I)	2e-42	Atcg00130	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage