Co-expression analysis

Gene ID	ZmAffx.1511.1.S1_at
Gene name
Homology with Arabidopsis	Similar to Atcg00740: - (HF=4e-48)
Module size	6 genes
NF	0.76
%ile	95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	ZmAffx.1511.1.S1_at	11990232-52	-	-	4e-48	Atcg00740	-	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	ZmAffx.1471.1.S1_at	11990232-38	-	-	9e-89	Atcg00580	-	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.97	ZmAffx.1357.1.S1_at	40794996-46	-	-	2e-1	At1g26921	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.96	ZmAffx.1356.1.S1_at	40794996-158	-	-	3e+0	At5g57950	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.96	ZmAffx.1486.1.S1_at	11990232-43	-	-	3e-56	Atcg00650	-	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	ZmAffx.1480.1.S1_at	40794996-107	-	-	1e+1	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.5	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig22529_at, orthologous to the query gene, ZmAffx.1511.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.3	Contig22529_at	Atcg00740	-	-	1e-58	Atcg00740	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig11890_at	Atcg00740	-	-	4e-5	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig22799_at	Atcg00740	-	-	1e+0	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig15097_at	Atcg00740	-	-	3e-1	At5g51720	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig8795_at	Atcg00740	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig7793_at	Atcg00740	-	-	2e-2	At4g24590	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig13046_at	Atcg00740	-	-	5e-3	At1g17080	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	Contig11247_at	Atcg00740	-	-	6e-2	At2g24440	selenium binding	O.I.	H.G.	S.X.	Please select
0.09	7.4	rbaal31o15_at	Atcg00740	-	-	3e-1	At1g77650	F-box family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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