CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.1500.1.S1_at

Gene name
Homology with Arabidopsis Similar to Atcg01310: - (HF=6e-78)

Module size 6 genes

NF 0.78

%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.95 ZmAffx.1500.1.S1_at 40794996-117 - - 6e-78 Atcg01310 - O.I. H.G. S.X.
0.83 95.6 0.95 ZmAffx.1472.1.S1_at 11990232-39 - - 3e-18 Atcg00590 - O.I. H.G. S.X.
0.77 92.1 0.97 ZmAffx.1519.1.S1_s_at 11990232-56 - - 3e-25 Atcg00770 - O.I. H.G. S.X.
0.67 85.8 0.95 ZmAffx.14.1.S1_at AF536189.1 - - 1e-8 Atmg01080 - O.I. H.G. S.X.
0.67 85.8 0.96 ZmAffx.1477.1.S1_at 40794996-104 - - 9e+0 At5g56100 glycine-rich protein / oleosin O.I. H.G. S.X.
0.56 74.4 0.94 ZmAffx.1395.1.S1_at 40794996-70 - - 2e-1 At1g80700 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.90	ZmAffx.1168.1.A1_at	AW600602	-	-	2e-1	At5g16380	unknown protein	O.I.	H.G.	S.X.
0.67	85.8	0.95	ZmAffx.163.1.S1_at	AI668189	-	-	8e-1	At5g55240	caleosin-related family protein / embryo-specific protein, putative	O.I.	H.G.	S.X.
0.63	81.1	0.93	ZmAffx.1392.1.S1_at	40794996-67	-	-	0	Atmg00513	-	O.I.	H.G.	S.X.
0.53	69.1	0.92	ZmAffx.1391.1.S1_at	40794996-66	-	-	6e-1	At5g16360	NC domain-containing protein	O.I.	H.G.	S.X.
0.53	69.1	0.95	ZmAffx.154.1.S1_at	AI668116	-	-	3e+0	At5g24655	LSU4 (RESPONSE TO LOW SULFUR 4)	O.I.	H.G.	S.X.
0.50	65.7	0.93	ZmAffx.154.1.A1_at	AI668116	-	-	3e+0	At5g24655	LSU4 (RESPONSE TO LOW SULFUR 4)	O.I.	H.G.	S.X.
0.50	65.7	0.93	ZmAffx.1502.1.S1_at	40794996-119	-	-	0	Atmg01360	-	O.I.	H.G.	S.X.
0.47	59.9	0.92	ZmAffx.808.1.S1_at	AI770390	hypothetical protein LOC100279421	-	8e-4	At2g40070	-	O.I.	H.G.	S.X.
0.42	51.3	0.91	ZmAffx.1515.1.S1_at	11990232-54	-	-	4e-24	Atcg00760	-	O.I.	H.G.	S.X.
0.42	51.3	0.93	ZmAffx.156.1.S1_at	AI668123	-	-	3e+0	At2g35345	unknown protein	O.I.	H.G.	S.X.
0.40	48.5	0.83	ZmAffx.156.1.A1_at	AI668123	hypothetical protein LOC100279310	-	3e+0	At2g35345	unknown protein	O.I.	H.G.	S.X.
0.38	44.2	0.92	ZmAffx.1483.1.S1_at	11990232-40	-	-	1e-33	Atcg00600	-	O.I.	H.G.	S.X.
0.35	38.9	0.91	ZmAffx.1189.1.A1_at	BE025258	-	-	8e-1	At3g04181	unknown protein	O.I.	H.G.	S.X.
0.33	36.0	0.91	ZmAffx.1513.1.S1_at	11990232-53	-	-	3e-25	Atcg00750	-	O.I.	H.G.	S.X.
0.31	31.6	0.95	ZmAffx.166.1.S1_at	AI668207	-	-	1e+1	At5g57370	unknown protein	O.I.	H.G.	S.X.
0.30	29.8	0.91	ZmAffx.1394.1.S1_at	40794996-69	-	-	2e-1	At5g46013	unknown protein	O.I.	H.G.	S.X.
0.28	28.1	0.89	ZmAffx.1494.1.S1_s_at	40794996-111	-	-	3e+0	At2g41730	unknown protein	O.I.	H.G.	S.X.
0.28	28.1	0.92	ZmAffx.1419.1.S1_at	40794996-94	-	-	3e-124	Atmg00830	-	O.I.	H.G.	S.X.
0.25	21.3	0.81	ZmAffx.1318.1.S1_at	40794996-144	-	-	3e+0	At2g18660	EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.4 98.7 GSM320456 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3 98.7 GSM320461 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320464 protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320462 protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320459 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6 98.4 GSM320460 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2 98.4 GSM320463 protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5 98.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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