Co-expression analysis

Gene ID	ZmAffx.1500.1.S1_at
Gene name
Homology with Arabidopsis	Similar to Atcg01310: - (HF=6e-78)
Module size	6 genes
NF	0.78
%ile	96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.95	ZmAffx.1500.1.S1_at	40794996-117	-	-	6e-78	Atcg01310	-	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.95	ZmAffx.1472.1.S1_at	11990232-39	-	-	3e-18	Atcg00590	-	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.97	ZmAffx.1519.1.S1_s_at	11990232-56	-	-	3e-25	Atcg00770	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	ZmAffx.14.1.S1_at	AF536189.1	-	-	1e-8	Atmg01080	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.96	ZmAffx.1477.1.S1_at	40794996-104	-	-	9e+0	At5g56100	glycine-rich protein / oleosin	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.94	ZmAffx.1395.1.S1_at	40794996-70	-	-	2e-1	At1g80700	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.4	98.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.128896.2.S1_at, orthologous to the query gene, ZmAffx.1500.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	91.1	TaAffx.128896.2.S1_at	Atcg01310	-	-	1e-160	Atcg01310	-	O.I.	H.G.	S.X.	Please select
0.45	65.2	Ta.4880.2.S1_at	Atcg01310	-	-	4e-3	At1g53800	endonuclease	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.20856.1.S1_at	Atcg01310	-	-	4e-12	At5g50920	CLPC1	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.92915.1.A1_at	Atcg01310	-	-	1e+1	At5g25540	CID6 (CTC-Interacting Domain 6)	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.6206.1.S1_at	Atcg01310	-	-	3e-2	At4g09730	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.50991.1.S1_at	Atcg01310	-	-	5e+0	At5g41071	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.25605.1.S1_at	Atcg01310	-	-	4e-2	At2g29760	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.106446.1.S1_at	Atcg01310	-	-	1e-15	At3g21300	RNA methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.113323.1.S1_at	Atcg01310	-	-	5e-5	At1g11750	CLPP6	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.9760.2.S1_at	Atcg01310	-	-	2e-2	At1g60550	ECHID (ENOYL-COA HYDRATASE/ISOMERASE D)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.4880.1.A1_at	Atcg01310	-	-	5e+0	At4g19003	VPS25	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.59073.1.S1_x_at	Atcg01310	-	-	4e+0	At5g16090	-	O.I.	H.G.	S.X.	Please select
0.21	25.5	TaAffx.31365.1.S1_s_at	Atcg01310	-	-	3e-13	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.12708.2.S1_at	Atcg01310	-	-	1e+0	At5g50090	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.19102.1.S1_at	Atcg01310	-	-	1e+0	At4g10670	GTC2	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.113889.1.S1_at	Atcg01310	-	-	1e+0	At5g41920	scarecrow transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.59073.1.S1_at	Atcg01310	-	-	4e+0	At5g16090	-	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.128896.15.S1_s_at	Atcg01310	-	-	2e-48	Atcg00790	-	O.I.	H.G.	S.X.	Please select
0.16	18.2	TaAffx.8174.1.S1_s_at	Atcg01310	-	-	6e-4	At5g53740	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.10582.2.S1_at	Atcg01310	-	-	3e-1	At5g47630	mtACP3 (mitochondrial acyl carrier protein 3)	O.I.	H.G.	S.X.	Please select
0.12	13.3	Ta.16700.1.S1_x_at	Atcg01310	-	-	1e+0	At4g24026	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	Ta.7855.1.S1_at	Atcg01310	-	-	4e-12	At1g80480	PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17)	O.I.	H.G.	S.X.	Please select
0.07	8.6	TaAffx.27156.1.S1_at	Atcg01310	-	-	7e+0	At5g24990	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.491.1.S1_at	Atcg01310	-	-	3e+0	At4g14815	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.06	7.6	TaAffx.29701.1.S1_at	Atcg01310	-	-	3e+0	At5g09600	SDH3-1	O.I.	H.G.	S.X.	Please select
0.04	5.8	TaAffx.128896.3.S1_at	Atcg01310	-	-	0	Atcg01310	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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