Co-expression analysis

Gene ID ZmAffx.1500.1.S1_at
Gene name
Homology with ArabidopsisSimilar to Atcg01310: - (HF=6e-78)
Module size 6 genes
NF 0.78
%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.95ZmAffx.1500.1.S1_at40794996-117--6e-78Atcg01310-O.I.H.G.S.X.
0.8395.60.95ZmAffx.1472.1.S1_at11990232-39--3e-18Atcg00590-O.I.H.G.S.X.
0.7792.10.97ZmAffx.1519.1.S1_s_at11990232-56--3e-25Atcg00770-O.I.H.G.S.X.
0.6785.80.95ZmAffx.14.1.S1_atAF536189.1--1e-8Atmg01080-O.I.H.G.S.X.
0.6785.80.96ZmAffx.1477.1.S1_at40794996-104--9e+0At5g56100glycine-rich protein / oleosinO.I.H.G.S.X.
0.5674.40.94ZmAffx.1395.1.S1_at40794996-70--2e-1At1g80700unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.498.7GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320461protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320462protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320459protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320460protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320463protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.18588.1.S1_at, orthologous to the query gene, ZmAffx.1500.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5078.6PtpAffx.18588.1.S1_atAtcg01310hypothetical protein-0Atcg01310-O.I.H.G.S.X.
0.5784.2PtpAffx.7984.1.S1_atAtcg01310hypothetical protein-4e-4At1g72610GER1 (GERMIN-LIKE PROTEIN 1)O.I.H.G.S.X.
0.5380.5PtpAffx.211229.1.S1_atAtcg01310hypothetical protein-1e-62Atcg00490-O.I.H.G.S.X.
0.5078.6PtpAffx.249.97.A1_x_atAtcg01310hypothetical protein-3e-33At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.4774.6PtpAffx.1615.2.S1_x_atAtcg01310--2e-6At1g60950FED AO.I.H.G.S.X.
0.4673.7PtpAffx.249.588.A1_atAtcg01310--1e-41At2g34430LHB1B1O.I.H.G.S.X.
0.4268.6PtpAffx.219022.1.S1_atAtcg01310--0Atcg00540-O.I.H.G.S.X.
0.3357.5PtpAffx.249.15.A1_x_atAtcg01310hypothetical protein-2e-28At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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