Co-expression analysis

Gene ID	ZmAffx.1471.1.S1_at
Gene name
Homology with Arabidopsis	Similar to Atcg00580: - (HF=9e-89)
Module size	6 genes
NF	0.89
%ile	99.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.96	ZmAffx.1471.1.S1_at	11990232-38	-	-	9e-89	Atcg00580	-	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.97	ZmAffx.1511.1.S1_at	11990232-52	-	-	4e-48	Atcg00740	-	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.98	ZmAffx.1486.1.S1_at	11990232-43	-	-	3e-56	Atcg00650	-	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.98	ZmAffx.1480.1.S1_at	40794996-107	-	-	1e+1	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.97	ZmAffx.1538.1.S1_at	40794996-128	-	-	3e+0	At3g21730	dihydroneopterin aldolase family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	ZmAffx.1357.1.S1_at	40794996-46	-	-	2e-1	At1g26921	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.4	98.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.6196.1.S1_at, orthologous to the query gene, ZmAffx.1471.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	93.6	TaAffx.6196.1.S1_at	Atcg00580	-	-	8e-50	Atcg00580	-	O.I.	H.G.	S.X.	Please select
0.71	88.0	Ta.2406.1.S1_x_at	Atcg00580	-	-	7e-7	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	O.I.	H.G.	S.X.	Please select
0.64	83.6	Ta.2742.2.S1_a_at	Atcg00580	-	-	7e+0	At5g46795	MSP2 (microspore-specific promoter 2)	O.I.	H.G.	S.X.	Please select
0.61	82.0	Ta.37.1.S1_at	Atcg00580	glyoxysomal malate dehydrogenase	-	7e-35	At5g09660	PMDH2 (peroxisomal NAD-malate dehydrogenase 2)	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.10577.1.S1_at	Atcg00580	-	-	7e+0	At3g50510	LBD28 (LOB DOMAIN-CONTAINING PROTEIN 28)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.2406.3.S1_x_at	Atcg00580	-	-	5e-3	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.1117.1.S1_at	Atcg00580	-	-	1e-27	At1g23310	GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.430.1.A1_x_at	Atcg00580	-	-	9e-74	At5g42270	VAR1 (VARIEGATED 1)	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.2737.1.S1_at	Atcg00580	-	-	9e+0	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.21467.1.S1_at	Atcg00580	-	-	1e-14	At4g26860	pyridoxal phosphate binding	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.1978.1.S1_a_at	Atcg00580	-	-	1e+0	At1g16880	uridylyltransferase-related	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.2406.1.S1_a_at	Atcg00580	-	-	7e-7	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.23765.1.S1_at	Atcg00580	-	-	2e-4	At4g15545	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.25434.1.S1_a_at	Atcg00580	-	-	4e+0	At3g23200	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.1971.1.S1_x_at	Atcg00580	-	-	5e-1	At5g08290	YLS8	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.3021.1.S1_a_at	Atcg00580	-	-	8e-4	At3g10970	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.1158.1.S1_at	Atcg00580	-	-	5e-24	At1g07110	F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage