Co-expression analysis

Gene ID	ZmAffx.1471.1.S1_at
Gene name
Homology with Arabidopsis	Similar to Atcg00580: - (HF=9e-89)
Module size	6 genes
NF	0.89
%ile	99.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.96	ZmAffx.1471.1.S1_at	11990232-38	-	-	9e-89	Atcg00580	-	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.97	ZmAffx.1511.1.S1_at	11990232-52	-	-	4e-48	Atcg00740	-	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.98	ZmAffx.1486.1.S1_at	11990232-43	-	-	3e-56	Atcg00650	-	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.98	ZmAffx.1480.1.S1_at	40794996-107	-	-	1e+1	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.97	ZmAffx.1538.1.S1_at	40794996-128	-	-	3e+0	At3g21730	dihydroneopterin aldolase family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	ZmAffx.1357.1.S1_at	40794996-46	-	-	2e-1	At1g26921	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.4	98.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, HK01E08r_s_at, orthologous to the query gene, ZmAffx.1471.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	HK01E08r_s_at	Atcg00580	-	-	4e+0	At2g27340	-	O.I.	H.G.	S.X.	Please select
0.54	70.3	Contig14168_s_at	Atcg00580	-	-	4e-18	At1g74880	NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig1972_at	Atcg00580	-	-	6e-1	At2g31862	-	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig14174_at	Atcg00580	-	-	3e-2	At1g76690	OPR2	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig8588_at	Atcg00580	-	-	1e-2	At2g35880	-	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig4244_at	Atcg00580	-	-	4e-9	At1g80360	aminotransferase class I and II family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	HV10E15u_at	Atcg00580	-	-	8e-1	At3g22920	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig7074_s_at	Atcg00580	-	-	5e-18	At1g23090	AST91 (SULFATE TRANSPORTER 91)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig11366_at	Atcg00580	-	-	3e-33	At4g21450	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig19276_at	Atcg00580	-	-	2e+0	At5g17120	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig16746_at	Atcg00580	-	-	6e-3	At2g18969	-	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig6859_at	Atcg00580	-	-	5e+0	At5g05380	PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig9809_at	Atcg00580	-	-	3e-1	At1g63820	-	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig5440_at	Atcg00580	-	-	6e-4	At4g28280	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig6966_at	Atcg00580	-	-	5e-29	At1g09330	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig14618_at	Atcg00580	-	-	1e+0	At1g49140	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig4384_at	Atcg00580	-	-	4e-17	At1g53260	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig8597_at	Atcg00580	-	-	2e-1	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig6330_at	Atcg00580	-	-	1e+0	At2g18160	ATBZIP2 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig13834_at	Atcg00580	-	-	1e-1	At5g04660	CYP77A4	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig14788_at	Atcg00580	-	-	4e-18	At3g51770	ETO1 (ETHYLENE OVERPRODUCER 1)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig5527_at	Atcg00580	-	-	2e-4	At3g16910	AAE7 (ACYL-ACTIVATING ENZYME 7)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig17805_at	Atcg00580	-	-	2e+0	At4g34090	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig6680_at	Atcg00580	-	-	2e-1	At2g23560	MES7 (METHYL ESTERASE 7)	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig14913_at	Atcg00580	-	-	1e+0	At5g38160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig75_at	Atcg00580	-	-	8e-45	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig6938_at	Atcg00580	-	-	1e+0	At1g45145	ATTRX5	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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