Co-expression analysis

Gene ID	ZmAffx.1448.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g37730: AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7) (HF=7e-1)
Module size	6 genes
NF	0.57
%ile	76.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	1.00	ZmAffx.1448.1.S1_at	40794996-5	-	-	7e-1	At4g37730	AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)	O.I.	H.G.	S.X.	Please select
0.67	85.8	1.00	ZmAffx.1449.1.S1_at	40794996-6	-	-	1e+0	At3g32090	transcription factor-related	O.I.	H.G.	S.X.	Please select
0.55	71.6	1.00	ZmAffx.1414.1.S1_at	40794996-89	-	-	0	Atmg00520	-	O.I.	H.G.	S.X.	Please select
0.53	69.1	1.00	ZmAffx.1352.1.S1_at	40794996-156	-	-	0	Atmg00160	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	ZmAffx.1386.1.S1_at	40794996-61	-	-	7e-1	At3g21920	pollen coat receptor kinase, putative	O.I.	H.G.	S.X.	Please select
0.29	28.1	1.00	ZmAffx.1416.1.S1_at	40794996-91	-	-	3e-1	At3g21860	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.2	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.5632.1.S1_at, orthologous to the query gene, ZmAffx.1448.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	TaAffx.5632.1.S1_at	At4g37730	-	-	4e+0	At2g12465	LCR50 (Low-molecular-weight cysteine-rich 50)	O.I.	H.G.	S.X.	Please select
0.52	73.7	TaAffx.5994.1.S1_at	At4g37730	-	-	1e+1	At5g41400	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	AFFX-Ta_CYP86-TA_5_at	At4g37730	-	-				O.I.	H.G.	S.X.	Please select
0.47	67.9	TaAffx.57313.1.S1_at	At4g37730	-	-	1e+0	At5g44080	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.19822.2.S1_at	At4g37730	-	-	1e-17	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	O.I.	H.G.	S.X.	Please select
0.45	65.2	AFFX-Ta_G-6-PDH_5_s_at	At4g37730	-	-				O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.30638.1.A1_s_at	At4g37730	hypothetical protein LOC543393	-	2e-7	At5g20350	TIP1 (TIP GROWTH DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.42	60.9	AFFX-Ta_CYP86-TA_M_at	At4g37730	-	-				O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.2752.1.A1_x_at	At4g37730	ribulosebisphosphate carboxylase small subunit	-	7e-9	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please select
0.34	48.1	TaAffx.27716.1.S1_at	At4g37730	-	-	1e+0	At5g13870	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.2752.1.A1_at	At4g37730	ribulosebisphosphate carboxylase small subunit	-	7e-9	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.4216.3.A1_at	At4g37730	-	-	1e+0	At1g32400	TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.25488.2.S1_at	At4g37730	-	-	1e+0	At4g28730	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.21296.2.S1_at	At4g37730	-	-	2e+0	At4g09260	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.16985.2.S1_at	At4g37730	-	-	4e+0	At4g16141	sequence-specific DNA binding / transcription factor/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.9024.3.S1_at	At4g37730	-	-	5e-12	At2g20650	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage