Co-expression analysis

Gene ID ZmAffx.1414.1.S1_at
Gene name
Homology with ArabidopsisSimilar to Atmg00520: - (HF=0)
Module size 6 genes
NF 0.58
%ile 77.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.01.00ZmAffx.1414.1.S1_at40794996-89--0Atmg00520-O.I.H.G.S.X.
0.7188.21.00ZmAffx.1352.1.S1_at40794996-156--0Atmg00160-O.I.H.G.S.X.
0.6077.81.00ZmAffx.1448.1.S1_at40794996-5--7e-1At4g37730AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)O.I.H.G.S.X.
0.5065.71.00ZmAffx.1422.1.S1_at40794996-97--3e+0At3g06180structural constituent of ribosomeO.I.H.G.S.X.
0.4251.31.00ZmAffx.1376.1.S1_s_at40794996-51--0Atmg00080-O.I.H.G.S.X.
0.3844.21.00ZmAffx.1386.1.S1_at40794996-61--7e-1At3g21920pollen coat receptor kinase, putativeO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.81.00ZmAffx.1453.1.S1_at11990232-20--3e-46Atcg00330-O.I.H.G.S.X.
0.6785.81.00ZmAffx.175.1.A1_atAI668276--3e+0At3g06820mov34 family proteinO.I.H.G.S.X.
0.6785.81.00ZmAffx.1415.1.S1_at40794996-90--4e-2At2g25312-O.I.H.G.S.X.
0.6077.80.99ZmAffx.149.1.S1_atAI667835--3e+0At3g10140RECA3 (recA homolog 3)O.I.H.G.S.X.
0.5369.11.00ZmAffx.173.1.S1_atAI668250--1e+1At5g38060unknown proteinO.I.H.G.S.X.
0.5369.11.00ZmAffx.1532.1.S1_at40794996-13--3e+0At5g48280unknown proteinO.I.H.G.S.X.
0.5369.11.00ZmAffx.1449.1.S1_at40794996-6--1e+0At3g32090transcription factor-relatedO.I.H.G.S.X.
0.5065.70.99Zm.9469.1.A1_atBM269128--2e+1At3g21610-O.I.H.G.S.X.
0.5065.71.00ZmAffx.159.1.A1_atAI668136--1e+1At5g48680sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.4759.91.00ZmAffx.138.1.A1_atAI667759--3e+0At1g66510AAR2 protein familyO.I.H.G.S.X.
0.4658.41.00ZmAffx.1424.1.S1_at40794996-99--9e+0At2g40240pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.4455.70.96Zm.175.1.S1_atAI649569glyceraldehyde-3-phosphate dehydrogenase-4e-49At2g24270ALDH11A3O.I.H.G.S.X.
0.4455.70.99ZmAffx.1533.1.S1_at40794996-14--3e+0At3g53610ATRAB8O.I.H.G.S.X.
0.4455.71.00ZmAffx.178.1.S1_atAI668305--3e+0At2g24040hydrophobic protein, putative / low temperature and salt responsive protein, putativeO.I.H.G.S.X.
0.4455.71.00ZmAffx.1161.1.A1_atAW438287CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase-5e-2At5g51010rubredoxin family proteinO.I.H.G.S.X.
0.3945.60.99ZmAffx.1408.1.S1_at40794996-83--3e+0At5g3985040S ribosomal protein S9 (RPS9C)O.I.H.G.S.X.
0.3844.21.00ZmAffx.1370.1.S1_at11990232-98--5e+0At5g42955unknown proteinO.I.H.G.S.X.
0.3742.30.99ZmAffx.1347.1.S1_s_at40794996-41--2e+0At3g18050unknown proteinO.I.H.G.S.X.
0.3641.31.00ZmAffx.1401.1.S1_at40794996-76--1e-80Atmg00480-O.I.H.G.S.X.
0.3538.90.99ZmAffx.1444.1.S1_at40794996-3--4e-2At5g44140ATPHB7 (PROHIBITIN 7)O.I.H.G.S.X.
0.3336.00.99Zm.16502.8.A1_atBM073491--1e-16At5g08180ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.3336.00.99ZmAffx.1455.1.S1_at11990232-22--0Atcg00350-O.I.H.G.S.X.
0.3233.40.99ZmAffx.1459.1.S1_at11990232-26--6e-148Atcg00430-O.I.H.G.S.X.
0.3233.41.00ZmAffx.1161.1.S1_atAW438287--5e-2At5g51010rubredoxin family proteinO.I.H.G.S.X.
0.3233.40.99ZmAffx.174.1.A1_atAI668269SAUR12 - auxin-responsive SAUR family member-3e+0At5g59060unknown proteinO.I.H.G.S.X.
0.3233.40.99ZmAffx.801.1.S1_atAI770364--3e+0At2g02990RNS1 (RIBONUCLEASE 1)O.I.H.G.S.X.
0.3233.40.99Zm.9014.2.A1_atAI714470PP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2-2e-68At2g42500PP2A-4O.I.H.G.S.X.
0.3233.41.00ZmAffx.147.1.A1_atAI667831Hypothetical protein LOC100192026-3e+0At2g20260PSAE-2 (photosystem I subunit E-2)O.I.H.G.S.X.
0.3233.41.00ZmAffx.1534.1.S1_at40794996-126--9e+0At5g52730heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.3131.60.99Zm.13095.1.A1_atCA404407hypothetical protein LOC100217092-1e-7At2g04530CPZO.I.H.G.S.X.
0.3029.80.99ZmAffx.1425.1.S1_at11990232-10--2e-25Atcg00220-O.I.H.G.S.X.
0.3029.80.99ZmAffx.1470.1.S1_at11990232-37--1e-21Atcg00570-O.I.H.G.S.X.
0.2928.10.99ZmAffx.1413.1.S1_at40794996-88--1e-113Atmg00660-O.I.H.G.S.X.
0.2928.10.99ZmAffx.1400.1.S1_at40794996-75--3e+0At4g05631unknown proteinO.I.H.G.S.X.
0.2928.11.00ZmAffx.1372.1.S1_at40794996-160--7e-1At2g34355nodulin-relatedO.I.H.G.S.X.
0.2828.11.00ZmAffx.1495.1.S1_at40794996-112--3e+0At4g10160zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2828.11.00ZmAffx.1346.1.S1_at40794996-153--5e-21Atmg00160-O.I.H.G.S.X.
0.2724.60.99Zm.9233.1.A1_atBM348207pollen allergen Phl p 2-5e+0At5g55750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2724.60.99ZmAffx.1456.1.S1_at11990232-23Photosystem I assembly protein ycf3-2e-116Atcg00360-O.I.H.G.S.X.
0.2724.61.00ZmAffx.1416.1.S1_at40794996-91--3e-1At3g21860ASK10 (ARABIDOPSIS SKP1-LIKE 10)O.I.H.G.S.X.
0.2724.61.00ZmAffx.178.1.A1_atAI668305trypsin/factor XIIA inhibitor-3e+0At2g24040hydrophobic protein, putative / low temperature and salt responsive protein, putativeO.I.H.G.S.X.
0.2724.61.00ZmAffx.1374.1.S1_at40794996-162--0Atmg00270-O.I.H.G.S.X.
0.2622.70.99Zm.3051.1.A1_atBM348968--4e-2At1g44830AP2 domain-containing transcription factor TINY, putativeO.I.H.G.S.X.
0.2622.71.00ZmAffx.144.1.A1_atAI667795--8e-1At3g57390AGL18O.I.H.G.S.X.
0.2622.70.99ZmAffx.1461.1.S1_at11990232-28ATP synthase epsilon chain-3e-65Atcg00470-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.999.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
22.499.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
21.699.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.799.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
19.899.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
19.399.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
19.399.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
19.299.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.299.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320460protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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