Co-expression analysis

Gene ID	ZmAffx.1414.1.S1_at
Gene name
Homology with Arabidopsis	Similar to Atmg00520: - (HF=0)
Module size	6 genes
NF	0.58
%ile	77.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	1.00	ZmAffx.1414.1.S1_at	40794996-89	-	-	0	Atmg00520	-	O.I.	H.G.	S.X.	Please select
0.71	88.2	1.00	ZmAffx.1352.1.S1_at	40794996-156	-	-	0	Atmg00160	-	O.I.	H.G.	S.X.	Please select
0.60	77.8	1.00	ZmAffx.1448.1.S1_at	40794996-5	-	-	7e-1	At4g37730	AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	ZmAffx.1422.1.S1_at	40794996-97	-	-	3e+0	At3g06180	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.42	51.3	1.00	ZmAffx.1376.1.S1_s_at	40794996-51	-	-	0	Atmg00080	-	O.I.	H.G.	S.X.	Please select
0.38	44.2	1.00	ZmAffx.1386.1.S1_at	40794996-61	-	-	7e-1	At3g21920	pollen coat receptor kinase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
22.9	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.4	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.6	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.3	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.3	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.2	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, HVSMEc0005E20f_at, orthologous to the query gene, ZmAffx.1414.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.0	HVSMEc0005E20f_at	Atmg00520	-	-	8e-174	Atmg00520	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig2592_at	Atmg00520	-	-	1e-17	At5g10860	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig10713_at	Atmg00520	-	-	7e-1	At2g34470	UREG (UREASE ACCESSORY PROTEIN G)	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig13065_at	Atmg00520	-	-	1e-4	At1g02335	GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig2052_s_at	Atmg00520	-	-	3e+0	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig15585_at	Atmg00520	-	-	6e-97	At1g79050	DNA repair protein recA	O.I.	H.G.	S.X.	Please select
0.18	18.2	HVSMEi0012N18r2_at	Atmg00520	-	-	1e+1	At5g18310	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	Contig18001_at	Atmg00520	-	-	8e-11	At1g48430	dihydroxyacetone kinase family protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig12927_at	Atmg00520	-	-	5e+0	At5g41350	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	Contig7594_at	Atmg00520	-	-	4e-9	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.05	4.1	Contig21492_at	Atmg00520	-	-	4e+0	At3g58190	LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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