Co-expression analysis

Gene ID ZmAffx.1400.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g05631: unknown protein (HF=3e+0)
Module size 6 genes
NF 0.64
%ile 85.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.01.00ZmAffx.1400.1.S1_at40794996-75--3e+0At4g05631unknown proteinO.I.H.G.S.X.
0.6785.81.00ZmAffx.138.1.A1_atAI667759--3e+0At1g66510AAR2 protein familyO.I.H.G.S.X.
0.6785.81.00ZmAffx.1372.1.S1_at40794996-160--7e-1At2g34355nodulin-relatedO.I.H.G.S.X.
0.5674.40.99ZmAffx.1351.1.S1_at40794996-43--2e+0At3g21520unknown proteinO.I.H.G.S.X.
0.4759.91.00ZmAffx.1370.1.S1_at11990232-98--5e+0At5g42955unknown proteinO.I.H.G.S.X.
0.4352.81.00ZmAffx.1376.1.S1_s_at40794996-51--0Atmg00080-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.99ZmAffx.1465.1.S1_at11990232-32--9e-60Atcg00520-O.I.H.G.S.X.
0.6785.80.99ZmAffx.1458.1.S1_at11990232-25--7e-94Atcg00420-O.I.H.G.S.X.
0.5976.10.99Zm.13095.1.A1_atCA404407hypothetical protein LOC100217092-1e-7At2g04530CPZO.I.H.G.S.X.
0.5369.10.99ZmAffx.801.1.S1_atAI770364--3e+0At2g02990RNS1 (RIBONUCLEASE 1)O.I.H.G.S.X.
0.5369.11.00ZmAffx.1401.1.S1_at40794996-76--1e-80Atmg00480-O.I.H.G.S.X.
0.5267.30.99Zm.14947.1.A1_atCK787043--6e+0At2g42500PP2A-4O.I.H.G.S.X.
0.5065.71.00ZmAffx.1461.1.S1_at11990232-28ATP synthase epsilon chain-3e-65Atcg00470-O.I.H.G.S.X.
0.5065.71.00ZmAffx.175.1.A1_atAI668276--3e+0At3g06820mov34 family proteinO.I.H.G.S.X.
0.4455.71.00ZmAffx.159.1.A1_atAI668136--1e+1At5g48680sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.4352.80.99ZmAffx.1460.1.S1_at11990232-27--4e-73Atcg00440-O.I.H.G.S.X.
0.4251.30.99Zm.16502.8.A1_atBM073491--1e-16At5g08180ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.4149.70.99ZmAffx.1402.1.S1_at40794996-77--3e+0At3g59680unknown proteinO.I.H.G.S.X.
0.3844.21.00ZmAffx.1374.1.S1_at40794996-162--0Atmg00270-O.I.H.G.S.X.
0.3538.90.99ZmAffx.462.1.A1_atAI677305--3e+0At4g22870leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putativeO.I.H.G.S.X.
0.3538.91.00ZmAffx.181.1.A1_atAI668330--8e-1At5g25640-O.I.H.G.S.X.
0.3336.00.99Zm.7900.1.A1_atAY108078.1--1e-7At5g51070ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)O.I.H.G.S.X.
0.3233.40.99Zm.10700.1.S1_atCF019059hypothetical protein LOC100276306-5e+0At5g42635glycine-rich proteinO.I.H.G.S.X.
0.3131.61.00ZmAffx.1532.1.S1_at40794996-13--3e+0At5g48280unknown proteinO.I.H.G.S.X.
0.3131.60.99ZmAffx.1453.1.S1_at11990232-20--3e-46Atcg00330-O.I.H.G.S.X.
0.3029.80.98ZmAffx.923.1.S1_atAI795306--3e+0At1g54830NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)O.I.H.G.S.X.
0.2928.10.99ZmAffx.1295.1.S1_s_at40794996-25--2e+0At4g04470PMP22O.I.H.G.S.X.
0.2928.11.00ZmAffx.1454.1.S1_at11990232-21--0Atcg00340-O.I.H.G.S.X.
0.2928.11.00ZmAffx.1414.1.S1_at40794996-89--0Atmg00520-O.I.H.G.S.X.
0.2928.11.00ZmAffx.1422.1.S1_at40794996-97--3e+0At3g06180structural constituent of ribosomeO.I.H.G.S.X.
0.2828.10.99ZmAffx.1530.1.S1_at40794996-12--6e-1At1g34070unknown proteinO.I.H.G.S.X.
0.2724.60.99ZmAffx.139.1.A1_atAI667769--1e+1At2g24200cytosol aminopeptidaseO.I.H.G.S.X.
0.2724.61.00ZmAffx.178.1.A1_atAI668305trypsin/factor XIIA inhibitor-3e+0At2g24040hydrophobic protein, putative / low temperature and salt responsive protein, putativeO.I.H.G.S.X.
0.2521.30.99Zm.9014.2.A1_atAI714470PP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2-2e-68At2g42500PP2A-4O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.199.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.199.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.099.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
19.799.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.999.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.499.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.099.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.899.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.199.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320459protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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