Co-expression analysis

Gene ID ZmAffx.1376.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to Atmg00080: - (HF=0)
Module size 6 genes
NF 0.69
%ile 90.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.01.00ZmAffx.1376.1.S1_s_at40794996-51--0Atmg00080-O.I.H.G.S.X.
0.8094.01.00ZmAffx.138.1.A1_atAI667759--3e+0At1g66510AAR2 protein familyO.I.H.G.S.X.
0.6077.81.00ZmAffx.1372.1.S1_at40794996-160--7e-1At2g34355nodulin-relatedO.I.H.G.S.X.
0.5571.61.00ZmAffx.1422.1.S1_at40794996-97--3e+0At3g06180structural constituent of ribosomeO.I.H.G.S.X.
0.5369.11.00ZmAffx.159.1.A1_atAI668136--1e+1At5g48680sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.4658.41.00ZmAffx.1414.1.S1_at40794996-89--0Atmg00520-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7792.11.00ZmAffx.1370.1.S1_at11990232-98--5e+0At5g42955unknown proteinO.I.H.G.S.X.
0.6785.81.00ZmAffx.1401.1.S1_at40794996-76--1e-80Atmg00480-O.I.H.G.S.X.
0.6785.81.00ZmAffx.175.1.A1_atAI668276--3e+0At3g06820mov34 family proteinO.I.H.G.S.X.
0.6785.81.00ZmAffx.1400.1.S1_at40794996-75--3e+0At4g05631unknown proteinO.I.H.G.S.X.
0.5674.40.99ZmAffx.462.1.A1_atAI677305--3e+0At4g22870leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putativeO.I.H.G.S.X.
0.5571.61.00ZmAffx.1352.1.S1_at40794996-156--0Atmg00160-O.I.H.G.S.X.
0.5369.11.00ZmAffx.1532.1.S1_at40794996-13--3e+0At5g48280unknown proteinO.I.H.G.S.X.
0.5369.11.00ZmAffx.1374.1.S1_at40794996-162--0Atmg00270-O.I.H.G.S.X.
0.5369.10.99Zm.13095.1.A1_atCA404407hypothetical protein LOC100217092-1e-7At2g04530CPZO.I.H.G.S.X.
0.5369.10.99ZmAffx.1351.1.S1_at40794996-43--2e+0At3g21520unknown proteinO.I.H.G.S.X.
0.5065.71.00ZmAffx.1461.1.S1_at11990232-28ATP synthase epsilon chain-3e-65Atcg00470-O.I.H.G.S.X.
0.4861.30.99ZmAffx.801.1.S1_atAI770364--3e+0At2g02990RNS1 (RIBONUCLEASE 1)O.I.H.G.S.X.
0.4861.30.99ZmAffx.1453.1.S1_at11990232-20--3e-46Atcg00330-O.I.H.G.S.X.
0.4658.40.99Zm.9014.2.A1_atAI714470PP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2-2e-68At2g42500PP2A-4O.I.H.G.S.X.
0.4455.70.99Zm.16502.8.A1_atBM073491--1e-16At5g08180ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.4455.70.99Zm.9469.1.A1_atBM269128--2e+1At3g21610-O.I.H.G.S.X.
0.4455.70.99ZmAffx.1460.1.S1_at11990232-27--4e-73Atcg00440-O.I.H.G.S.X.
0.4251.30.99Zm.14947.1.A1_atCK787043--6e+0At2g42500PP2A-4O.I.H.G.S.X.
0.4048.51.00ZmAffx.178.1.A1_atAI668305trypsin/factor XIIA inhibitor-3e+0At2g24040hydrophobic protein, putative / low temperature and salt responsive protein, putativeO.I.H.G.S.X.
0.3844.21.00ZmAffx.1533.1.S1_at40794996-14--3e+0At3g53610ATRAB8O.I.H.G.S.X.
0.3641.31.00ZmAffx.173.1.S1_atAI668250--1e+1At5g38060unknown proteinO.I.H.G.S.X.
0.3641.31.00ZmAffx.1346.1.S1_at40794996-153--5e-21Atmg00160-O.I.H.G.S.X.
0.3641.30.99ZmAffx.181.1.A1_atAI668330--8e-1At5g25640-O.I.H.G.S.X.
0.3641.31.00ZmAffx.1454.1.S1_at11990232-21--0Atcg00340-O.I.H.G.S.X.
0.3538.90.99ZmAffx.1530.1.S1_at40794996-12--6e-1At1g34070unknown proteinO.I.H.G.S.X.
0.3336.00.99ZmAffx.1425.1.S1_at11990232-10--2e-25Atcg00220-O.I.H.G.S.X.
0.3336.00.99ZmAffx.1458.1.S1_at11990232-25--7e-94Atcg00420-O.I.H.G.S.X.
0.3336.01.00ZmAffx.1415.1.S1_at40794996-90--4e-2At2g25312-O.I.H.G.S.X.
0.3233.40.99ZmAffx.1402.1.S1_at40794996-77--3e+0At3g59680unknown proteinO.I.H.G.S.X.
0.3233.41.00ZmAffx.147.1.A1_atAI667831Hypothetical protein LOC100192026-3e+0At2g20260PSAE-2 (photosystem I subunit E-2)O.I.H.G.S.X.
0.3233.41.00ZmAffx.1459.1.S1_at11990232-26--6e-148Atcg00430-O.I.H.G.S.X.
0.3131.60.98ZmAffx.923.1.S1_atAI795306--3e+0At1g54830NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)O.I.H.G.S.X.
0.3131.60.98ZmAffx.174.1.A1_atAI668269SAUR12 - auxin-responsive SAUR family member-3e+0At5g59060unknown proteinO.I.H.G.S.X.
0.3131.60.99Zm.7900.1.A1_atAY108078.1--1e-7At5g51070ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)O.I.H.G.S.X.
0.3131.60.99ZmAffx.146.1.A1_atAI66782630S ribosomal protein S31-2e-1At4g21450vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.3131.61.00ZmAffx.162.1.S1_atAI668180Hypothetical protein LOC100193115-2e-1At2g27240unknown proteinO.I.H.G.S.X.
0.3131.61.00ZmAffx.1448.1.S1_at40794996-5--7e-1At4g37730AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)O.I.H.G.S.X.
0.3029.80.99Zm.3051.1.A1_atBM348968--4e-2At1g44830AP2 domain-containing transcription factor TINY, putativeO.I.H.G.S.X.
0.2928.10.99ZmAffx.1295.1.S1_s_at40794996-25--2e+0At4g04470PMP22O.I.H.G.S.X.
0.2724.60.99Zm.9233.1.A1_atBM348207pollen allergen Phl p 2-5e+0At5g55750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2724.60.99ZmAffx.1465.1.S1_at11990232-32--9e-60Atcg00520-O.I.H.G.S.X.
0.2724.61.00ZmAffx.178.1.S1_atAI668305--3e+0At2g24040hydrophobic protein, putative / low temperature and salt responsive protein, putativeO.I.H.G.S.X.
0.2724.61.00ZmAffx.1161.1.S1_atAW438287--5e-2At5g51010rubredoxin family proteinO.I.H.G.S.X.
0.2724.61.00ZmAffx.1495.1.S1_at40794996-112--3e+0At4g10160zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2622.70.99ZmAffx.1413.1.S1_at40794996-88--1e-113Atmg00660-O.I.H.G.S.X.
0.2521.30.99ZmAffx.1449.1.S1_at40794996-6--1e+0At3g32090transcription factor-relatedO.I.H.G.S.X.
0.2521.31.00ZmAffx.1386.1.S1_at40794996-61--7e-1At3g21920pollen coat receptor kinase, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.999.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.899.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.199.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.799.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.198.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM206310Lower pulvinus 60 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO
9.898.3GSM206304Upper pulvinus 60 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO
6.497.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM206298Lower pulvinus 60 min total RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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