Co-expression analysis

Gene ID	ZmAffx.1376.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to Atmg00080: - (HF=0)
Module size	6 genes
NF	0.69
%ile	90.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	1.00	ZmAffx.1376.1.S1_s_at	40794996-51	-	-	0	Atmg00080	-	O.I.	H.G.	S.X.	Please select
0.80	94.0	1.00	ZmAffx.138.1.A1_at	AI667759	-	-	3e+0	At1g66510	AAR2 protein family	O.I.	H.G.	S.X.	Please select
0.60	77.8	1.00	ZmAffx.1372.1.S1_at	40794996-160	-	-	7e-1	At2g34355	nodulin-related	O.I.	H.G.	S.X.	Please select
0.55	71.6	1.00	ZmAffx.1422.1.S1_at	40794996-97	-	-	3e+0	At3g06180	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.53	69.1	1.00	ZmAffx.159.1.A1_at	AI668136	-	-	1e+1	At5g48680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	1.00	ZmAffx.1414.1.S1_at	40794996-89	-	-	0	Atmg00520	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.9	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.8	98.3	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.4	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the grape gene, 1611697_s_at, orthologous to the query gene, ZmAffx.1376.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	1611697_s_at	Atmg00080	-	-	2e-132	Atmg00090	-	O.I.	H.G.	S.X.	Please select
0.44	64.1	1609465_at	Atmg00080	-	-	1e-1	At1g08920	sugar transporter, putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	1613797_at	Atmg00080	hypothetical LOC100254751 /// hypothetical LOC100256339	-	3e-168	Atmg00160	-	O.I.	H.G.	S.X.	Please select
0.17	18.2	1622509_at	Atmg00080	-	-	2e-11	At1g49300	RABG3E (RAB GTPASE HOMOLOG G3E)	O.I.	H.G.	S.X.	Please select
0.07	7.8	1608301_at	Atmg00080	-	-	3e-1	At2g01580	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1612751_at	Atmg00080	hypothetical protein LOC100242745	-	5e-5	At1g67195	MIR414 (MICRORNA 414)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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