Co-expression analysis

Gene ID	ZmAffx.1372.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g34355: nodulin-related (HF=7e-1)
Module size	6 genes
NF	0.73
%ile	94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	1.00	ZmAffx.1372.1.S1_at	40794996-160	-	-	7e-1	At2g34355	nodulin-related	O.I.	H.G.	S.X.	Please select
0.83	95.6	1.00	ZmAffx.138.1.A1_at	AI667759	-	-	3e+0	At1g66510	AAR2 protein family	O.I.	H.G.	S.X.	Please select
0.77	92.1	1.00	ZmAffx.1370.1.S1_at	11990232-98	-	-	5e+0	At5g42955	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	1.00	ZmAffx.1376.1.S1_s_at	40794996-51	-	-	0	Atmg00080	-	O.I.	H.G.	S.X.	Please select
0.56	74.4	1.00	ZmAffx.159.1.A1_at	AI668136	-	-	1e+1	At5g48680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	ZmAffx.1374.1.S1_at	40794996-162	-	-	0	Atmg00270	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.4	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1615364_at, orthologous to the query gene, ZmAffx.1372.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1615364_at	At2g34355	-	-	2e-8	At4g24770	RBP31 (31-KDA RNA BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1614897_at	At2g34355	hypothetical protein LOC100247155	-	2e-6	At1g22140	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1621952_at	At2g34355	hypothetical protein LOC100259489	-	3e-54	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select
0.16	16.7	1610160_at	At2g34355	-	-	4e+0	At3g16800	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.08	8.5	1608134_at	At2g34355	hypothetical protein LOC100242295	-	1e-65	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please select
0.02	3.2	1622403_s_at	At2g34355	-	-	2e+0	At1g78600	LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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