CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.1372.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g34355: nodulin-related (HF=7e-1)

Module size 6 genes

NF 0.73

%ile 94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 1.00 ZmAffx.1372.1.S1_at 40794996-160 - - 7e-1 At2g34355 nodulin-related O.I. H.G. S.X.
0.83 95.6 1.00 ZmAffx.138.1.A1_at AI667759 - - 3e+0 At1g66510 AAR2 protein family O.I. H.G. S.X.
0.77 92.1 1.00 ZmAffx.1370.1.S1_at 11990232-98 - - 5e+0 At5g42955 unknown protein O.I. H.G. S.X.
0.67 85.8 1.00 ZmAffx.1376.1.S1_s_at 40794996-51 - - 0 Atmg00080 - O.I. H.G. S.X.
0.56 74.4 1.00 ZmAffx.159.1.A1_at AI668136 - - 1e+1 At5g48680 sterile alpha motif (SAM) domain-containing protein O.I. H.G. S.X.
0.50 65.7 1.00 ZmAffx.1374.1.S1_at 40794996-162 - - 0 Atmg00270 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.4 99.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0 99.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7 99.1 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0 99.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9 98.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9 98.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8 98.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3 98.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9 98.8 GSM320460 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7 98.8 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os02g0279016, orthologous to the query gene, ZmAffx.1372.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os02g0279016 At2g34355 - - 2e+0 At3g57860 UVI4-LIKE (UV-B-INSENSITIVE 4-LIKE) O.I. H.G. S.X.
0.47 62.3 Os01g0343800 At2g34355 - - 2e+0 At4g36925 unknown protein O.I. H.G. S.X.
0.40 51.1 Os01g0967400 At2g34355 - Conserved hypothetical protein 3e+0 At1g06510 unknown protein O.I. H.G. S.X.
0.39 48.3 Os05g0368100 At2g34355 - - 3e-1 At5g37200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.33 38.8 Os04g0218300 At2g34355 - - 1e-1 At2g24550 unknown protein O.I. H.G. S.X.
0.30 32.7 Os10g0368100 At2g34355 - Glutathione S-transferase, C-terminal domaincontaining protein 1e-1 At1g17190 ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26) O.I. H.G. S.X.
0.28 31.1 Os01g0560500 At2g34355 - - 2e+0 At4g03113 unknown protein O.I. H.G. S.X.
0.23 21.2 Os03g0779400 At2g34355 - - 2e+0 At5g41570 WRKY24 O.I. H.G. S.X.
0.22 19.4 Os07g0468500 At2g34355 - Leucine-rich repeat, plant specific containingprotein 2e-2 At1g65560 allyl alcohol dehydrogenase, putative O.I. H.G. S.X.
0.18 13.7 Os05g0433400 At2g34355 - Protein of unknown function DUF1218 family protein 3e-1 At4g21740 unknown protein O.I. H.G. S.X.
0.13 8.2 Os06g0194700 At2g34355 - - 2e+0 At4g21213 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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