Co-expression analysis

Gene ID	ZmAffx.1372.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g34355: nodulin-related (HF=7e-1)
Module size	6 genes
NF	0.73
%ile	94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	1.00	ZmAffx.1372.1.S1_at	40794996-160	-	-	7e-1	At2g34355	nodulin-related	O.I.	H.G.	S.X.	Please select
0.83	95.6	1.00	ZmAffx.138.1.A1_at	AI667759	-	-	3e+0	At1g66510	AAR2 protein family	O.I.	H.G.	S.X.	Please select
0.77	92.1	1.00	ZmAffx.1370.1.S1_at	11990232-98	-	-	5e+0	At5g42955	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	1.00	ZmAffx.1376.1.S1_s_at	40794996-51	-	-	0	Atmg00080	-	O.I.	H.G.	S.X.	Please select
0.56	74.4	1.00	ZmAffx.159.1.A1_at	AI668136	-	-	1e+1	At5g48680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	ZmAffx.1374.1.S1_at	40794996-162	-	-	0	Atmg00270	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.4	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, EBpi03_SQ003_K07_at, orthologous to the query gene, ZmAffx.1372.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.3	EBpi03_SQ003_K07_at	At2g34355	-	-	2e-1	At2g09388	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig21916_at	At2g34355	-	-	4e-1	At2g42760	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig23768_at	At2g34355	-	-	1e+0	At1g17780	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	HU14G08u_s_at	At2g34355	-	-	3e-1	At5g38400	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig19065_at	At2g34355	-	-	1e+0	At5g58787	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig8818_at	At2g34355	-	-	2e+0	At5g47080	CKB1	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig18089_at	At2g34355	-	-	5e+0	At4g31330	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig13653_at	At2g34355	-	-	4e+0	At4g18080	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	HZ65E19r_at	At2g34355	-	-	2e+1	At5g40530	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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