Co-expression analysis

Gene ID ZmAffx.1370.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g42955: unknown protein (HF=5e+0)
Module size 6 genes
NF 0.69
%ile 91.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.01.00ZmAffx.1370.1.S1_at11990232-98--5e+0At5g42955unknown proteinO.I.H.G.S.X.
0.7389.91.00ZmAffx.1372.1.S1_at40794996-160--7e-1At2g34355nodulin-relatedO.I.H.G.S.X.
0.6381.11.00ZmAffx.1374.1.S1_at40794996-162--0Atmg00270-O.I.H.G.S.X.
0.6077.81.00ZmAffx.178.1.A1_atAI668305trypsin/factor XIIA inhibitor-3e+0At2g24040hydrophobic protein, putative / low temperature and salt responsive protein, putativeO.I.H.G.S.X.
0.5674.41.00ZmAffx.159.1.A1_atAI668136--1e+1At5g48680sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.5369.11.00ZmAffx.1376.1.S1_s_at40794996-51--0Atmg00080-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.899.0GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.499.0GSM320461protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.998.9GSM320462protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.698.9GSM320459protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.198.8GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320460protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320463protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320458protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.87543.1.S1_at, orthologous to the query gene, ZmAffx.1370.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6GmaAffx.87543.1.S1_atAt5g42955--3e+0At3g23380RIC5 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 5)O.I.H.G.S.X.
0.2532.6Gma.10114.1.A1_atAt5g42955--6e-1At2g40600appr-1-p processing enzyme family proteinO.I.H.G.S.X.
0.1822.3Gma.15133.1.A1_atAt5g42955--4e-1At4g13860glycine-rich RNA-binding protein, putativeO.I.H.G.S.X.
0.1619.7GmaAffx.56094.1.S1_atAt5g42955--3e-1At5g03250phototropic-responsive NPH3 family proteinO.I.H.G.S.X.
0.047.0GmaAffx.92103.1.S1_s_atAt5g42955translationally controlled tumor-like protein-6e-28At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.013.4Gma.3291.2.S1_atAt5g42955--6e-72At4g18710BIN2 (BRASSINOSTEROID-INSENSITIVE 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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