Co-expression analysis

Gene ID	ZmAffx.1316.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g78172: unknown protein (HF=6e-1)
Module size	6 genes
NF	0.52
%ile	67.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.99	ZmAffx.1316.1.S1_at	40794996-30	-	-	6e-1	At1g78172	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.99	Zm.7830.1.S1_at	BM080060	nucleic acid binding protein	-	4e-1	At2g03190	ASK16 (ARABIDOPSIS SKP1-LIKE 16)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	ZmAffx.1142.1.A1_at	AW399873	-	-	2e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.7016.1.A1_at	AY103859.1	-	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.99	Zm.17818.1.A1_at	CK145213	-	-	6e+0	At5g52470	FIB1 (FIBRILLARIN 1)	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.99	Zm.1094.1.A1_at	BM339500	-	-	2e-5	At5g26210	AL4 (ALFIN-LIKE 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.6	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.6	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1619902_at, orthologous to the query gene, ZmAffx.1316.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1619902_at	At1g78172	-	-	8e-1	At5g03220	transcriptional co-activator-related	O.I.	H.G.	S.X.	Please select
0.50	72.7	1616118_at	At1g78172	hypothetical protein LOC100246658	-	8e-1	At5g03220	transcriptional co-activator-related	O.I.	H.G.	S.X.	Please select
0.36	50.7	1621140_at	At1g78172	hypothetical protein LOC100266085	-	2e+0	At3g03930	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.36	50.7	1609122_at	At1g78172	hypothetical protein LOC100267142	-	7e-27	At2g04530	CPZ	O.I.	H.G.	S.X.	Please select
0.33	45.7	1611466_at	At1g78172	hypothetical protein LOC100253536	-	7e-26	At4g19100	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1620736_a_at	At1g78172	hypothetical protein LOC100255654	-	3e-39	At1g11430	plastid developmental protein DAG, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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