Co-expression analysis

Gene ID	ZmAffx.1316.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g78172: unknown protein (HF=6e-1)
Module size	6 genes
NF	0.52
%ile	67.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.99	ZmAffx.1316.1.S1_at	40794996-30	-	-	6e-1	At1g78172	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.99	Zm.7830.1.S1_at	BM080060	nucleic acid binding protein	-	4e-1	At2g03190	ASK16 (ARABIDOPSIS SKP1-LIKE 16)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	ZmAffx.1142.1.A1_at	AW399873	-	-	2e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.7016.1.A1_at	AY103859.1	-	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.99	Zm.17818.1.A1_at	CK145213	-	-	6e+0	At5g52470	FIB1 (FIBRILLARIN 1)	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.99	Zm.1094.1.A1_at	BM339500	-	-	2e-5	At5g26210	AL4 (ALFIN-LIKE 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.6	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.6	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, HVSMEk0017G20r2_at, orthologous to the query gene, ZmAffx.1316.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	HVSMEk0017G20r2_at	At1g78172	-	-	3e+0	At2g27670	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig415_s_at	At1g78172	-	-	3e-43	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.49	63.7	HS05M16u_at	At1g78172	-	-	1e+0	At2g16210	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.49	63.7	HA10M12u_at	At1g78172	-	-	3e+0	At1g76705	calmodulin binding	O.I.	H.G.	S.X.	Please select
0.47	62.2	HS06P18u_at	At1g78172	-	-	5e-1	At3g22630	PBD1 (20S PROTEASOME BETA SUBUNIT D1)	O.I.	H.G.	S.X.	Please select
0.47	62.2	rbaal41c09_at	At1g78172	-	-	3e-15	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig23835_at	At1g78172	-	-	1e+0	At2g42260	UVI4 (UV-B-INSENSITIVE 4)	O.I.	H.G.	S.X.	Please select
0.45	59.3	S0001000057I10F1_at	At1g78172	-	-	1e+1	At3g06190	BPM2 (BTB-POZ AND MATH DOMAIN 2)	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig1976_x_at	At1g78172	-	-	4e+0	At5g38180	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	HT06M11u_at	At1g78172	-	-	1e+1	Atcg01310	-	O.I.	H.G.	S.X.	Please select
0.41	53.9	HW03I17u_at	At1g78172	-	-	4e+0	At5g38760	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	rbags16h12_at	At1g78172	-	-	9e-1	At2g04066	MATE efflux protein-related	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig2379_s_at	At1g78172	-	-	2e-8	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	HV_CEa0014H05r2_at	At1g78172	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	HV_CEb0020F06r2_at	At1g78172	-	-	2e-1	At5g16960	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.35	45.1	EBro08_SQ007_C12_at	At1g78172	-	-	9e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig24882_at	At1g78172	-	-	9e-1	At3g09032	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	HW02G06T_at	At1g78172	-	-	2e+1	At5g59613	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig12986_at	At1g78172	-	-	7e-13	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	EBem04_SQ003_H15_at	At1g78172	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	HA10J04u_at	At1g78172	-	-	2e+0	At3g02065	DEAD/DEAH box helicase family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	baal1j07_at	At1g78172	-	-	5e-15	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig13056_at	At1g78172	-	-	4e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.26	30.4	9507414_R_4264-4644_at	At1g78172	-	-	1e+1	At5g06320	NHL3	O.I.	H.G.	S.X.	Please select
0.23	26.1	HVSMEh0084N15r2_s_at	At1g78172	-	-	6e+0	At1g48510	cytochrome c oxidase assembly protein surfeit-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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