Co-expression analysis

Gene ID	ZmAffx.1213.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g10190: calmodulin, putative (HF=2e-1)
Module size	15 genes
NF	0.51
%ile	66.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	81.7	0.89	ZmAffx.1213.1.S1_at	BU051439	-	-	2e-1	At3g10190	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.94	Zm.6306.2.A1_at	AI691326	Protein kinase catalytic domain	-	1e-10	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	O.I.	H.G.	S.X.	Please select
0.70	87.0	0.94	Zm.8110.1.A1_at	CF623866	hypothetical protein LOC100278802	-	3e-25	At5g49820	emb1879 (embryo defective 1879)	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.94	Zm.5989.1.A1_at	AI666066	-	-	3e-1	At4g24960	ATHVA22D	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.93	ZmAffx.225.1.S1_at	AI670237	-	-	1e+1	At5g09470	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.94	Zm.13523.1.A1_at	AY108425.1	-	-	6e-1	At5g59470	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.94	Zm.6977.5.A1_at	AI881652	Sucrose synthase	-	1e-11	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.62	79.8	0.95	Zm.19299.1.A1_at	BM074654	-	-	4e-3	At4g09270	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.94	Zm.18525.1.A1_at	CO530497	-	-	1e-4	At5g28150	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.94	Zm.13494.1.A1_at	AY108782.1	-	-	4e-1	At2g17300	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.94	Zm.13033.1.A1_at	AY108193.1	-	-	4e-2	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.95	Zm.5851.15.A1_x_at	AI759130	-	-	9e-1	At2g04031	-	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.93	ZmAffx.1179.1.A1_at	AW927503	-	-	1e+1	Atmg01060	-	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.95	Zm.2821.1.A1_s_at	BM351274	hypothetical protein LOC100278693	-	2e+0	At2g28510	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	Zm.7712.1.A1_at	BQ539501	-	-	4e+0	At4g30097	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.0	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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