Co-expression analysis

Gene ID ZmAffx.1208.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g20580: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (HF=8e-1)
Module size 8 genes
NF 0.50
%ile 64.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7087.00.99ZmAffx.1208.1.A1_atBE186278--8e-1At1g20580small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.5775.10.99Zm.13459.1.A1_atCO532418hypothetical protein LOC100279797-7e-12At5g58240bis(5'-adenosyl)-triphosphatase, putativeO.I.H.G.S.X.
0.5369.11.00Zm.10332.1.A1_atBQ048110--2e+0At3g28990unknown proteinO.I.H.G.S.X.
0.5065.70.99Zm.2605.1.S1_atAY105350.1hypothetical protein LOC100192590-2e+0At5g416706-phosphogluconate dehydrogenase family proteinO.I.H.G.S.X.
0.4861.30.99ZmAffx.113.1.A1_atAI665585Hypothetical protein LOC100193950-3e+0At5g639903'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putativeO.I.H.G.S.X.
0.4861.30.99ZmAffx.833.1.A1_atAI770565--3e+0At4g21980APG8A (AUTOPHAGY 8A)O.I.H.G.S.X.
0.3945.60.99ZmAffx.220.1.A1_atAI670228--3e+0At4g14890ferredoxin family proteinO.I.H.G.S.X.
0.3538.90.99ZmAffx.807.1.A1_atAI770389Hypothetical protein LOC100194367-3e+0At1g65650UCH2O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.998.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.198.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.998.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320467protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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